Miyakogusa Predicted Gene

Lj0g3v0345909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345909.1 Non Chatacterized Hit- tr|B7FJB0|B7FJB0_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,89.24,0,Cyclin,Cyclin PHO80-like; no description,Cyclin-like;
Cyclin-like,Cyclin-like; SUBFAMILY NOT NAMED,N,CUFF.23726.1
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379846-223...   347   3e-96
AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591688-185...   336   6e-93
AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18442287-184...   149   2e-36
AT5G61650.1 | Symbols: CYCP4;2, CYCP4 | CYCLIN P4;2 | chr5:24778...   145   2e-35
AT5G07450.1 | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358418-2359...   143   1e-34
AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703927-7704...   135   3e-32
AT3G63120.1 | Symbols: CYCP1;1 | cyclin p1;1 | chr3:23323143-233...   132   2e-31
AT3G05327.1 | Symbols:  | Cyclin family protein | chr3:1517581-1...   117   7e-27

>AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 |
           chr3:22379846-22380641 FORWARD LENGTH=230
          Length = 230

 Score =  347 bits (891), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 182/210 (86%)

Query: 1   MASSSSLTISPRKLRSDLYSYSYQEDSSTPLVINVLASLIERSMARTERIVKNCSKSLSK 60
           MA S+SLTISPRKLRSDLYSYSYQ +S TPLVI+VL+SLI+R++ R ERI +    S   
Sbjct: 1   MAVSNSLTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGA 60

Query: 61  AISTNIFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINTRNVH 120
              T IFDCREIPDMTIQSYL RIFRYT+AGPSVYVVAYVYIDRFCQ NPGFRI+  NVH
Sbjct: 61  GGKTQIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVH 120

Query: 121 RLLITTIMVASKYVEDLNYRNSYFGRVGGLTTNEVNKLELEFLFLMGFKLHVNVSIFESY 180
           RLLITTIM+ASKYVEDLNYRNSYF +VGGL T ++NKLELEFLFLMGFKLHVNVS+FESY
Sbjct: 121 RLLITTIMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESY 180

Query: 181 CCHLEREVSIGGGYHIERTLRCAEEIKTRH 210
           CCHLEREVS GGGY IE+ LRCAEEIK+R 
Sbjct: 181 CCHLEREVSFGGGYQIEKALRCAEEIKSRQ 210


>AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 |
           chr2:18591688-18592443 FORWARD LENGTH=222
          Length = 222

 Score =  336 bits (862), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 163/207 (78%), Positives = 182/207 (87%), Gaps = 5/207 (2%)

Query: 5   SSLTISPRKLRSDLYSYSYQEDSST-PLVINVLASLIERSMARTERIVKNCSKSLSKAIS 63
            SL ISPRKLRSDLYSYSYQ+DS+T PLVI+VL+SLIER++AR ERI    S+S      
Sbjct: 2   DSLAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERI----SRSYGGFGK 57

Query: 64  TNIFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINTRNVHRLL 123
           T +FDCREIPDMTIQSYLERIFRYT+AGPSVYVVAYVYIDRFCQNN GFRI+  NVHRLL
Sbjct: 58  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 117

Query: 124 ITTIMVASKYVEDLNYRNSYFGRVGGLTTNEVNKLELEFLFLMGFKLHVNVSIFESYCCH 183
           ITTIM+ASKYVED+NY+NSYF +VGGL T ++N LELEFLFLMGFKLHVNVS+FESYCCH
Sbjct: 118 ITTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCH 177

Query: 184 LEREVSIGGGYHIERTLRCAEEIKTRH 210
           LEREVSIGGGY IE+ LRCAEEIK+R 
Sbjct: 178 LEREVSIGGGYQIEKALRCAEEIKSRQ 204


>AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 |
           chr2:18442287-18443304 REVERSE LENGTH=202
          Length = 202

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 113/159 (71%), Gaps = 4/159 (2%)

Query: 32  VINVLASLIERSMARTERIVKNCSKSLSKAISTNIFDCREIPDMTIQSYLERIFRYTRAG 91
           +I  L+SL+ER +A +  + +  +   +++   ++F     P +TIQSYLERIF+Y    
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVA---TQSQRVSVFHGLSRPTITIQSYLERIFKYANCS 68

Query: 92  PSVYVVAYVYIDRFCQNNPGFRINTRNVHRLLITTIMVASKYVEDLNYRNSYFGRVGGLT 151
           PS +VVAYVY+DRF    P   IN+ NVHRLLIT++MVA+K+++DL Y N+Y+ +VGG++
Sbjct: 69  PSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGIS 128

Query: 152 TNEVNKLELEFLFLMGFKLHVNVSIFESYCCHLEREVSI 190
           T E+N LEL+FLF +GF+L+V  + F +Y  +L++E+++
Sbjct: 129 TKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167


>AT5G61650.1 | Symbols: CYCP4;2, CYCP4 | CYCLIN P4;2 |
           chr5:24778265-24779019 FORWARD LENGTH=219
          Length = 219

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 109/161 (67%), Gaps = 8/161 (4%)

Query: 30  PLVINVLASLIERSMARTERIVKNCSKSLSKAISTNIFDCREIPDMTIQSYLERIFRYTR 89
           P V+  ++ L++R        V   + +LS+    + F     P ++I+SYLERIF Y  
Sbjct: 23  PSVLTAMSYLLQR--------VSETNDNLSQKQKPSSFTGVTKPSISIRSYLERIFEYAN 74

Query: 90  AGPSVYVVAYVYIDRFCQNNPGFRINTRNVHRLLITTIMVASKYVEDLNYRNSYFGRVGG 149
              S Y+VAY+Y+DRF +  P   IN+ NVHRL+IT+++V++K+++DL+Y N Y+ +VGG
Sbjct: 75  CSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGG 134

Query: 150 LTTNEVNKLELEFLFLMGFKLHVNVSIFESYCCHLEREVSI 190
           ++  E+N LEL+FLF +GF+L+V VS F +YCC L+RE+++
Sbjct: 135 ISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175


>AT5G07450.1 | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358418-2359253
           REVERSE LENGTH=216
          Length = 216

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 110/165 (66%), Gaps = 4/165 (2%)

Query: 30  PLVINVLASLIERSMARTERIVKNCSKSLSKAISTNIFDCREIPDMTIQSYLERIFRYTR 89
           P VI  ++SL++R     +    + S+   +    + F+    P ++I+SY+ERIF+Y  
Sbjct: 21  PNVITAMSSLLQRVSETND----DLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYAD 76

Query: 90  AGPSVYVVAYVYIDRFCQNNPGFRINTRNVHRLLITTIMVASKYVEDLNYRNSYFGRVGG 149
              S Y+VAY+Y+DRF Q  P   I++ NVHRL+IT+++V++K+++DL Y N+++ +VGG
Sbjct: 77  CSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGG 136

Query: 150 LTTNEVNKLELEFLFLMGFKLHVNVSIFESYCCHLEREVSIGGGY 194
           +TT E+N LEL+FLF +GF+L+V +S +  YC  L+RE+ +   Y
Sbjct: 137 ITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMY 181


>AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703927-7704813
           REVERSE LENGTH=210
          Length = 210

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 115/165 (69%), Gaps = 3/165 (1%)

Query: 26  DSSTPLVINVLASLIERSMARTERIVKNCSKSLSKAISTNIFDCREIPDMTIQSYLERIF 85
           +++TP V+ +++ ++E+ +AR E + K  +K   K++    F     P ++I  YLERI+
Sbjct: 21  EAATPRVLTIISHVMEKLVARNEWLAKQ-TKGFGKSLEA--FHGVRAPSISIAKYLERIY 77

Query: 86  RYTRAGPSVYVVAYVYIDRFCQNNPGFRINTRNVHRLLITTIMVASKYVEDLNYRNSYFG 145
           +YT+  P+ +VV YVYIDR    +PG  + + NVHRLL+T +M+A+K ++D++Y N ++ 
Sbjct: 78  KYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYA 137

Query: 146 RVGGLTTNEVNKLELEFLFLMGFKLHVNVSIFESYCCHLEREVSI 190
           RVGG++  ++NK+ELE LFL+ F++ V+  +FESYC HLE+E+ +
Sbjct: 138 RVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182


>AT3G63120.1 | Symbols: CYCP1;1 | cyclin p1;1 |
           chr3:23323143-23323893 REVERSE LENGTH=221
          Length = 221

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 3/146 (2%)

Query: 58  LSKAISTNIFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINTR 117
           L    S  +FD R  P+++I  YL+RIF+Y+   PS +V+A++YID F        +   
Sbjct: 56  LGSPDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRAL-LKPL 114

Query: 118 NVHRLLITTIMVASKYVEDLNYRNSYFGRVGGLTTNEVNKLELEFLFLMGFKLHVNVSIF 177
           NVHRL+ITT+M+A+K  +D  + N+Y+ RVGG+TT E+N+LE+E LF + FKL V+   F
Sbjct: 115 NVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTF 174

Query: 178 ESYCCHLEREVSIGGGYHIERTLRCA 203
            ++CC LE++     G+ IE  ++ A
Sbjct: 175 HTHCCQLEKQNR--DGFQIEWPIKEA 198


>AT3G05327.1 | Symbols:  | Cyclin family protein |
           chr3:1517581-1518399 REVERSE LENGTH=212
          Length = 212

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 7/167 (4%)

Query: 26  DSSTPLVINVLASLIERSMARTERIVKNCSKSLSKAISTNIFDCREIPDMTIQSYLERIF 85
           DS+ P VI +LAS +E+ + + +   K      +KA    +F   + P ++I  Y ERI 
Sbjct: 27  DSTPPRVITLLASTLEKMIQKNK---KKFHTRHNKADEITMFHGSKAPSLSIYRYTERIH 83

Query: 86  RYTRAGPSVYVVAYVYIDRFCQ----NNPGFRINTRNVHRLLITTIMVASKYVEDLNYRN 141
           RY +  P  +V A+ YI R+ Q     +   R+ + NVHRLLIT+++VA+K++E   Y N
Sbjct: 84  RYAQCSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLERQCYNN 143

Query: 142 SYFGRVGGLTTNEVNKLELEFLFLMGFKLHVNVSIFESYCCHLEREV 188
           +Y+ ++GG++T E+N+LE  FL  + F+L++    FE +C  L++E 
Sbjct: 144 AYYAKIGGVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLMLQKET 190