Miyakogusa Predicted Gene

Lj0g3v0345899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345899.1 tr|G7LH32|G7LH32_MEDTR Microfibrillar-associated
protein OS=Medicago truncatula GN=MTR_8g083140
PE=4,59.76,1.4013e-45,Prp19_bind,Micro-fibrillar-associated protein 1,
C-terminal; coiled-coil,NULL; seg,NULL; SUBFAMILY N,CUFF.23725.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08580.1 | Symbols:  | microfibrillar-associated protein-rela...   116   1e-26
AT5G17900.1 | Symbols:  | microfibrillar-associated protein-rela...   115   1e-26

>AT4G08580.1 | Symbols:  | microfibrillar-associated protein-related
           | chr4:5462190-5463718 FORWARD LENGTH=435
          Length = 435

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 11/111 (9%)

Query: 59  LKEKQETQRLRNMSEEERIREWQIRXXXXXXXXXXXXXWRFMQRYYHSGAFFQDQ----- 113
           L+E++E ++LRNM+E+ER R+W+ R             W FMQ+YYH GAFFQ       
Sbjct: 284 LREREEIEKLRNMTEQER-RDWE-RKNPKPSSAQPKKKWNFMQKYYHKGAFFQADPDDEA 341

Query: 114 ----LDTIMLHDFSAPTGQDKMDKTILPSVMQVKRFGLRGRSKWTHLINED 160
                D I   DFSAPTG+D++DK+ILP VMQVK FG  GR+KWTHL+NED
Sbjct: 342 GSAGTDGIFQRDFSAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNED 392


>AT5G17900.1 | Symbols:  | microfibrillar-associated protein-related
           | chr5:5925144-5926690 FORWARD LENGTH=435
          Length = 435

 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 11/111 (9%)

Query: 59  LKEKQETQRLRNMSEEERIREWQIRXXXXXXXXXXXXXWRFMQRYYHSGAFFQDQ----- 113
           L+E++E ++LRNM+E+ER R+W+ R             W FMQ+YYH GAFFQ       
Sbjct: 284 LREREEIEKLRNMTEQER-RDWE-RKNPKPLSAQPKKKWNFMQKYYHKGAFFQADPDDEA 341

Query: 114 ----LDTIMLHDFSAPTGQDKMDKTILPSVMQVKRFGLRGRSKWTHLINED 160
                D I   DFSAPTG+D++DK+ILP VMQVK FG  GR+KWTHL+NED
Sbjct: 342 GSAGTDGIFQRDFSAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNED 392