Miyakogusa Predicted Gene

Lj0g3v0345729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345729.1 Non Chatacterized Hit- tr|J3MMT8|J3MMT8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G2,33.33,6e-18,seg,NULL; UBIQUITIN_2,Ubiquitin supergroup; no
description,NULL; Ubiquitin-like,NULL,CUFF.23723.1
         (300 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08110.1 | Symbols:  | nucleic acid binding;ATP-dependent hel...    89   3e-18

>AT5G08110.1 | Symbols:  | nucleic acid binding;ATP-dependent
           helicases;ATP binding;helicases;ATP-dependent helicases
           | chr5:2594854-2600114 REVERSE LENGTH=1141
          Length = 1141

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 117/290 (40%), Gaps = 82/290 (28%)

Query: 9   IQIRTLTGESTTLHITPSATVQHLKLLLNHSFSPATNSPNFHLFFKGEKLRLQAKIGSYP 68
           I +R++ GESTT+ ++   T++ LK  L   F PA++S NFHL+ KGEKL+L  ++ +  
Sbjct: 15  ISVRSINGESTTVQVSSDGTIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAIT 74

Query: 69  IQLGEFLVLVPFSKKDSTSTGTQNPDPVLDSSNVANSASGSTSNLADSTWSNIMEDLSHL 128
           I  G+ L L PF KK+      Q P P L      +S S  TS + D       E+    
Sbjct: 75  INDGDILGLFPFKKKEL----RQTPKPDLSK---PSSLSSRTSTMKD-------ENAKRA 120

Query: 129 RDGTAECGDNSASNSEFGAFASEPSKXXXXXXXXXXQEKQIELPYHLILNTLDCTC--VF 186
            D     G+    + E                           PY    + L+  C   F
Sbjct: 121 EDHCV--GEKRKRDEE-------------------------ACPYGFFNDDLESECKDAF 153

Query: 187 SEHNCEVFSKVLESVNCLSDLPLGHCKLLRKARLEGAFVKGGVTCLCPPWLKTVVKAFAF 246
              N E  ++VL+S NCL+      C +   +            C CP W          
Sbjct: 154 KGQNTEKLAEVLKSRNCLTSPGSTKCLMSWDSSS--------SLCSCPDW---------- 195

Query: 247 INIFSAFLHLQRRNITAFLLEEALNQVAKFGVKLGLHDVKHLSLLCPNCV 296
                                E+L+++A  GV++ + DVK+LS++CP  +
Sbjct: 196 ---------------------ESLSRLAMSGVRVRIQDVKNLSVICPKVI 224