Miyakogusa Predicted Gene

Lj0g3v0345479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345479.1 Non Chatacterized Hit- tr|D8SZD2|D8SZD2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,46.72,9e-19,seg,NULL,CUFF.23825.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation f...   149   5e-37
AT1G32130.2 | Symbols: IWS1 | Transcription elongation factor (T...   131   1e-31
AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation f...    50   3e-07

>AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation
           factor (TFIIS) family protein | chr1:11559146-11561786
           REVERSE LENGTH=502
          Length = 502

 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 95/127 (74%), Gaps = 7/127 (5%)

Query: 1   MRNIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLXXXXXXXXXXXXH------ASRP 54
           MRN++++R P+RRP VKKP+NKA  M+SRD D DL++                     RP
Sbjct: 377 MRNLDEDRVPYRRPPVKKPSNKAT-MESRDGDFDLEIRERKTGLTSGQSSRGDRQMTMRP 435

Query: 55  EATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEG 114
           EATP+DF+IRPQSK+DP+E+ ARAKQ S DQ+R+KMNKKLQQL+  KK++LQATK+SVEG
Sbjct: 436 EATPLDFLIRPQSKIDPDEIIARAKQVSQDQRRVKMNKKLQQLKGTKKKRLQATKVSVEG 495

Query: 115 RGMIKYL 121
           RGMIKYL
Sbjct: 496 RGMIKYL 502


>AT1G32130.2 | Symbols: IWS1 | Transcription elongation factor
           (TFIIS) family protein | chr1:11559146-11561786 REVERSE
           LENGTH=493
          Length = 493

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 88/127 (69%), Gaps = 16/127 (12%)

Query: 1   MRNIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLXXXXXXXXXXXXH------ASRP 54
           MRN++++R P+RRP VKKP+NKA  M+SRD D DL++                     RP
Sbjct: 377 MRNLDEDRVPYRRPPVKKPSNKAT-MESRDGDFDLEIRERKTGLTSGQSSRGDRQMTMRP 435

Query: 55  EATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEG 114
           EATP+DF+IRPQSK+DP+E+ ARAKQ         MNKKLQQL+  KK++LQATK+SVEG
Sbjct: 436 EATPLDFLIRPQSKIDPDEIIARAKQ---------MNKKLQQLKGTKKKRLQATKVSVEG 486

Query: 115 RGMIKYL 121
           RGMIKYL
Sbjct: 487 RGMIKYL 493


>AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation
           factor (TFIIS) family protein | chr4:10405503-10407339
           FORWARD LENGTH=406
          Length = 406

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 18  KPANKAPGMQSRDSDLDLDLXXXXXXXXXXXXHASRPEATPMDFVIRPQSKVDPEEVRAR 77
           K A K  G ++RD + D+DL             A  P    MDF IRP SKVD  +    
Sbjct: 310 KTAPKVSGTRARDFNTDIDLYELGTWTGRA--RAKIPTTMSMDFKIRPPSKVDINQ---- 363

Query: 78  AKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 121
            ++    + +M+   K +Q +  +K  +QA KLSV+GR M+KYL
Sbjct: 364 -EEEPCSKWQMEKRHKNKQQKNIRKGGMQALKLSVDGRTMLKYL 406