Miyakogusa Predicted Gene

Lj0g3v0345299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345299.1 Non Chatacterized Hit- tr|J3LQI0|J3LQI0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,27.47,8e-19,DEAD,DNA/RNA helicase, DEAD/DEAH box type,
N-terminal; HELICASE-RELATED,NULL; P-loop containing
nucl,gene.g27047.t1.1
         (299 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535...   142   3e-34
AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535...   139   3e-33
AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535...   133   1e-31
AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ...    98   7e-21
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020...    98   7e-21
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60...    96   3e-20
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO...    96   3e-20
AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 ...    92   5e-19
AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:685957...    87   1e-17
AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-686906...    59   5e-09

>AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
           chr3:15753548-15760830 FORWARD LENGTH=1570
          Length = 1570

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 28/259 (10%)

Query: 2   LIKDIAQAIKSSG-KKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKT 59
           + K + +A+ SS   K+LII LAP V+LV Q   +++     +VEEY+G +GVD+W  + 
Sbjct: 73  ITKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYFGAKGVDKWTSQR 132

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD----- 114
           W++E S++DVLVMTPQILL+ L  AFLK+EM+ L++IDECH+ TGNHPYA++MK+     
Sbjct: 133 WDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKEFYHES 192

Query: 115 ---PIARALYD---VGQPQTXXXXXXXXIALFTQTIKRDKAQSACACVSAPSTWMLESNC 168
              P    L     + + Q           +F    +    + A      P  +    +C
Sbjct: 193 TSKPKIFGLTASAVIRKAQVSELERLMDSKIFNPEEREGVEKFATTVKEGPILYNPSPSC 252

Query: 169 KVIPLLWIVRVRYQNLKASWILRILTKVNLFGQSDALLSEFQSNYKDVDSKFKTLHQRMS 228
               L    ++   +LK    LR L ++             + ++ ++D+KF+T  +R+S
Sbjct: 253 S---LELKEKLETSHLKFDASLRRLQELG------------KDSFLNMDNKFETYQKRLS 297

Query: 229 NDLAKVLYCLEDLGLLCAY 247
            D  ++L+CL++LGL+CA+
Sbjct: 298 IDYREILHCLDNLGLICAH 316


>AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
           chr3:15753548-15760830 FORWARD LENGTH=1580
          Length = 1580

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 38/269 (14%)

Query: 2   LIKDIAQAIKSSG-KKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKT 59
           + K + +A+ SS   K+LII LAP V+LV Q   +++     +VEEY+G +GVD+W  + 
Sbjct: 73  ITKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYFGAKGVDKWTSQR 132

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD----- 114
           W++E S++DVLVMTPQILL+ L  AFLK+EM+ L++IDECH+ TGNHPYA++MK+     
Sbjct: 133 WDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKEFYHES 192

Query: 115 ---P-----IARALYDVG--------QPQTXXXXXXXXIALFTQTIKRDKAQSACACVSA 158
              P      A A+   G          Q           +F    +    + A      
Sbjct: 193 TSKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFATTVKEG 252

Query: 159 PSTWMLESNCKVIPLLWIVRVRYQNLKASWILRILTKVNLFGQSDALLSEFQSNYKDVDS 218
           P  +    +C    L    ++   +LK    LR L ++             + ++ ++D+
Sbjct: 253 PILYNPSPSCS---LELKEKLETSHLKFDASLRRLQELG------------KDSFLNMDN 297

Query: 219 KFKTLHQRMSNDLAKVLYCLEDLGLLCAY 247
           KF+T  +R+S D  ++L+CL++LGL+CA+
Sbjct: 298 KFETYQKRLSIDYREILHCLDNLGLICAH 326


>AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
           chr3:15753548-15760830 FORWARD LENGTH=1531
          Length = 1531

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 138/252 (54%), Gaps = 53/252 (21%)

Query: 2   LIKDIAQAIKSSG-KKKLIIVLAPIVHL----VHQLYNDLKHHTGFQVEEYYG-RGVDEW 55
           + K + +A+ SS   K+LII LAP V+L    +  L N        +VEEY+G +GVD+W
Sbjct: 73  ITKRLIKAMGSSDTDKRLIIFLAPTVNLQCCEIRALVN-------LKVEEYFGAKGVDKW 125

Query: 56  NLKTWEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKDP 115
             + W++E S++DVLVMTPQILL+ L  AFLK+EM+ L++IDECH+ TGNHPYA++MK  
Sbjct: 126 TSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMK-- 183

Query: 116 IARALYDVGQPQTXXXXXXXXIALFTQTIKRDKAQSACACVSAPSTWMLESNCKVIPLLW 175
                  +  P+         +  F  T+K             P  +    +C    L  
Sbjct: 184 -------IFNPE-----EREGVEKFATTVKE-----------GPILYNPSPSCS---LEL 217

Query: 176 IVRVRYQNLKASWILRILTKVNLFGQSDALLSEFQSNYKDVDSKFKTLHQRMSNDLAKVL 235
             ++   +LK    LR L ++             + ++ ++D+KF+T  +R+S D  ++L
Sbjct: 218 KEKLETSHLKFDASLRRLQELG------------KDSFLNMDNKFETYQKRLSIDYREIL 265

Query: 236 YCLEDLGLLCAY 247
           +CL++LGL+CA+
Sbjct: 266 HCLDNLGLICAH 277


>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
           REVERSE LENGTH=1388
          Length = 1388

 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 20  IVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTWEKEVSENDVLVMTPQILL 78
           + L P V LV Q    LK HT  +V  Y+G  GVD W+  TW++EV + +VLVMTP ILL
Sbjct: 74  VFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILL 133

Query: 79  NALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           +AL  +FL + MI ++++DECH+A G HPYA IM++
Sbjct: 134 DALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMRE 169


>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
           chr3:768020-774833 REVERSE LENGTH=1388
          Length = 1388

 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 20  IVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTWEKEVSENDVLVMTPQILL 78
           + L P V LV Q    LK HT  +V  Y+G  GVD W+  TW++EV + +VLVMTP ILL
Sbjct: 74  VFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILL 133

Query: 79  NALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           +AL  +FL + MI ++++DECH+A G HPYA IM++
Sbjct: 134 DALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMRE 169


>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
           ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
           LENGTH=1909
          Length = 1909

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 50/324 (15%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGR-GVDEWNLKT 59
           +LIK + + + S  +K L + L P V LV+Q    +++ T FQV  Y G  G D W+ + 
Sbjct: 281 LLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRR 340

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKDPIARA 119
           W++E     VLVMT QILLN L  + +++E I L+++DECH+A   HPY+ +M +     
Sbjct: 341 WQREFESKQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTT 400

Query: 120 LYDVGQPQTXXXXXXXXIALFTQT-----IKRDKAQSACAC-VSAPSTWMLESNCKV--- 170
             D               A+F  T     +K   +Q  CA  +    T +  + C +   
Sbjct: 401 PKD------------KRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDR 448

Query: 171 ------IPLLWIVRVRYQNLKASWIL-----RILTKVNLFGQSDALLSEFQ------SNY 213
                 +P+   + V Y      W L     +++  V    Q+ +  S++Q      +  
Sbjct: 449 KELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGA 508

Query: 214 KDVDSKFKTLHQRMSNDLAKVL--------YCLEDLGLLCAYEVFIKLQDIMEKYCAIKK 265
           KD   +   + +R  +D A  L        Y L +LG  CAY+V    Q  +    + ++
Sbjct: 509 KDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVG---QSFLSALQSDER 565

Query: 266 KKLEIICKNHESPYKDHLCSIQCE 289
              ++  K  ES   + +  +QCE
Sbjct: 566 VNFQVDVKFQESYLSEVVSLLQCE 589


>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079
           FORWARD LENGTH=1910
          Length = 1910

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 50/324 (15%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGR-GVDEWNLKT 59
           +LIK + + + S  +K L + L P V LV+Q    +++ T FQV  Y G  G D W+ + 
Sbjct: 281 LLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRR 340

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKDPIARA 119
           W++E     VLVMT QILLN L  + +++E I L+++DECH+A   HPY+ +M +     
Sbjct: 341 WQREFESKQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTT 400

Query: 120 LYDVGQPQTXXXXXXXXIALFTQT-----IKRDKAQSACAC-VSAPSTWMLESNCKV--- 170
             D               A+F  T     +K   +Q  CA  +    T +  + C +   
Sbjct: 401 PKD------------KRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDR 448

Query: 171 ------IPLLWIVRVRYQNLKASWIL-----RILTKVNLFGQSDALLSEFQ------SNY 213
                 +P+   + V Y      W L     +++  V    Q+ +  S++Q      +  
Sbjct: 449 KELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGA 508

Query: 214 KDVDSKFKTLHQRMSNDLAKVL--------YCLEDLGLLCAYEVFIKLQDIMEKYCAIKK 265
           KD   +   + +R  +D A  L        Y L +LG  CAY+V    Q  +    + ++
Sbjct: 509 KDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVG---QSFLSALQSDER 565

Query: 266 KKLEIICKNHESPYKDHLCSIQCE 289
              ++  K  ES   + +  +QCE
Sbjct: 566 VNFQVDVKFQESYLSEVVSLLQCE 589


>AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525
           REVERSE LENGTH=1374
          Length = 1374

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 1/80 (1%)

Query: 36  LKHHTGFQVEEYYG-RGVDEWNLKTWEKEVSENDVLVMTPQILLNALTKAFLKVEMISLM 94
           LK HT  +V  Y+G  GVD W+  TW++EV + +VLVMTP ILL+AL  +FL + MI ++
Sbjct: 76  LKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHSFLSLSMIKVL 135

Query: 95  VIDECHNATGNHPYARIMKD 114
           ++DECH+A G HPYA IM++
Sbjct: 136 IVDECHHAGGKHPYACIMRE 155


>AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 |
           chr5:6859571-6869068 REVERSE LENGTH=1702
          Length = 1702

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVDEWNLKTW 60
           MLI ++   + S  KK + I LAP V LV Q    +     F+V  + G      +   W
Sbjct: 156 MLIYELGHLVLSP-KKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEW 214

Query: 61  EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNA--TGNHPYARIMK 113
           E+E++ N+VLVMTPQILL+ L   F+K+E ISL++ DECH+A    NHPYA IMK
Sbjct: 215 EREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMK 269


>AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068
           REVERSE LENGTH=1688
          Length = 1688

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 17/115 (14%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVDEWNLKTW 60
           MLI ++   + S  KK + I LAP V LV Q    +     F+V  + G      +   W
Sbjct: 156 MLIYELGHLVLSP-KKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEW 214

Query: 61  EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNA--TGNHPYARIMK 113
           E+E++ N+                F+K+E ISL++ DECH+A    NHPYA IMK
Sbjct: 215 EREIAANE--------------HCFIKMECISLLIFDECHHAQQQSNHPYAEIMK 255