Miyakogusa Predicted Gene

Lj0g3v0345269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345269.1 CUFF.23689.1
         (1330 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57060.2 | Symbols:  | binding | chr3:21115078-21121051 REVER...  1766   0.0  
AT3G57060.1 | Symbols:  | binding | chr3:21115078-21121051 REVER...  1764   0.0  
AT4G15890.1 | Symbols:  | binding | chr4:9017453-9022745 FORWARD...    67   1e-10

>AT3G57060.2 | Symbols:  | binding | chr3:21115078-21121051 REVERSE
            LENGTH=1415
          Length = 1415

 Score = 1766 bits (4574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1275 (68%), Positives = 1024/1275 (80%), Gaps = 31/1275 (2%)

Query: 1    MAPHFVFPRTLQDLEEESPEDN-RLCVQNPIDLASLRSSQLEEFVKGVSFDLSDKELLCV 59
            MAP FVFP+ L+ LEE+ PEDN RL  QNP+D+ SLR S LEEFVKGVSFDLSD+EL CV
Sbjct: 1    MAPPFVFPQILRALEED-PEDNHRLFAQNPVDVTSLRPSDLEEFVKGVSFDLSDRELFCV 59

Query: 60   EDHDVFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLLPNVDSLSRA---SEGDLPFLL 116
            ED DVFD                            +VLLPNVDS+SR+    E D+P ++
Sbjct: 60   EDQDVFDRVYSLVRSFFSLPPSCKCNLVESLRSNLSVLLPNVDSISRSVQDQEDDVP-II 118

Query: 117  DRLASHRNAFKIYTFFLLSIVLAEDXXXXXXXXXXXXXXXXXRKKQPAKSWNWEPQRARI 176
            DR+ SHRNA KIYTFFLL++V+ E+                 RKKQ  +SWNWEPQR R+
Sbjct: 119  DRITSHRNALKIYTFFLLTVVMNEESHISSVETTKVAARG--RKKQIIQSWNWEPQRGRM 176

Query: 177  LNLIANSLEINLELLFGSPDLDEGYLSFITKNTFSMFENTALLKDSDAKDALCRIIGACS 236
            LNLIANSLEINL LLFGS DLDE YLSFI KN+F++FEN  +LKD++ KDALCRIIGA +
Sbjct: 177  LNLIANSLEINLSLLFGSSDLDENYLSFIVKNSFTLFENATILKDAETKDALCRIIGASA 236

Query: 237  TKYHYTAQSCASIMHLIHKYDFVVTHMADAVAGAKKKYSDGTLATSLVRDIGRTNPKDYV 296
            TKYHY  QSCASIMHLIHKYDF V H+ADAVA A+ KYSDGTLA +++RDIGRT+PK YV
Sbjct: 237  TKYHYIVQSCASIMHLIHKYDFAVVHIADAVARAESKYSDGTLAVTIIRDIGRTDPKAYV 296

Query: 297  KDTAGAENVGRFLVELADRLPKLISTNIGILITHFGGESYKIRNALVAVLGKLIAKAFKD 356
            KDTAGA+NVGRFLVELADRLPKL+STN+G+L+ HFGGESYKIRNALV VLGKL+AKAF D
Sbjct: 297  KDTAGADNVGRFLVELADRLPKLMSTNVGVLVPHFGGESYKIRNALVGVLGKLVAKAFND 356

Query: 357  VDSAEVSSKSIRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 416
            V+  ++SSKS+RLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA
Sbjct: 357  VE-GDMSSKSLRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 415

Query: 417  EVAAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATLDQYXXXX-----XXXX 471
             ++AGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATL+QY             
Sbjct: 416  SLSAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATLEQYKRKLNELEPTEHA 475

Query: 472  SPSEGSDSENLNGNGEVEDLGIETVTKVQQESMTDTCMSQADDAVPLENSSSVPDVGNLE 531
            S    SD E+ NG+GE++DL +ET TK+ Q+S++D+C  +  + +  E   SVPD+GN+E
Sbjct: 476  SKESTSDGESCNGDGEIDDLHLETTTKIHQDSLSDSCQPENGEEIS-EKDVSVPDIGNVE 534

Query: 532  QTRALVASLEAGSRFSKCIGATMPTLVQLMASSSATDVENTILLLMRCKQFQIDGSEECL 591
            QT+AL+ASLEAG RFSKC+ A+MP LVQLMASSSATDVEN ILLLMRCKQFQIDG+E CL
Sbjct: 535  QTKALIASLEAGLRFSKCMSASMPILVQLMASSSATDVENAILLLMRCKQFQIDGAEACL 594

Query: 592  RKMLPLVFSQDKSIYEAVENAFHTIYIRKNPVETAKNLLSLATDSNIGDLAALEFIVGAL 651
            RK+LPL FSQDKSIYEAVENAF +IYIRKNPV+TAK LL+LA DSNIGD AALEFIV AL
Sbjct: 595  RKILPLAFSQDKSIYEAVENAFISIYIRKNPVDTAKQLLNLAIDSNIGDQAALEFIVNAL 654

Query: 652  VSKGDISSSTISALWDFFCFNVGGTTAEQSRGALSVLCMVAKKSSGALGSHLQDIIDIGF 711
            VSKG+ISSST SALWDFFCFN+ GTTAEQSRGALS+LCM AK S   LGSH+QDIIDIGF
Sbjct: 655  VSKGEISSSTTSALWDFFCFNINGTTAEQSRGALSILCMAAKSSPRILGSHIQDIIDIGF 714

Query: 712  GRWSKVDPLLARTACIAIERLSEDDKKKLLTNNNVRIFGILESIITGFWLPANIWYAAAD 771
            GRW+KV+PLLARTAC  I+R SE+D+KKLL ++  R+FGILES+ITG WLP NI+YA AD
Sbjct: 715  GRWAKVEPLLARTACTVIQRFSEEDRKKLLLSSGSRLFGILESLITGNWLPENIYYATAD 774

Query: 772  KAITALYAIHPTPETIAADLIKKFLNSVFNXXXXXXXXXXXX-----MPITVQGEKLSRF 826
            KAI+A+Y IHPTPET+A+ +IKK L++VF+                 +   VQ  KLSRF
Sbjct: 775  KAISAIYMIHPTPETLASTIIKKSLSTVFDVVEQEEAQTDTENNKVDILTPVQVAKLSRF 834

Query: 827  LFVISHIAMNQLVYIESCARKIQKQKLRKEEKDIQSQTADSNDKESNGTQKGNDINAELG 886
            LF +SHIAMNQLVYIESC +KI++QK +K++   +SQ  + N +    TQ+ N INAELG
Sbjct: 835  LFAVSHIAMNQLVYIESCIQKIRRQKTKKDKPAAESQNTEENLE---ATQENNGINAELG 891

Query: 887  FAASEDAALDALFEKAEKEIVSGGSNEKNLVGISATFLSKLCRNYGLLQKYPELQASAML 946
             AAS+DA LD L E+AE+EIVSGGS EKNL+G  ATFLSKLCRN+ LLQK+PELQASAML
Sbjct: 892  LAASDDALLDTLAERAEREIVSGGSVEKNLIGECATFLSKLCRNFSLLQKHPELQASAML 951

Query: 947  ALCRLMIIDADFCDANLQLQFTVVENANSETVRSNCTIALGDLAVRFPNLLEPWTENMYA 1006
            ALCR MIIDA FC++NLQL FTVVENA SE VRSNCT++LGDLAVRFPNLLEPWTENMYA
Sbjct: 952  ALCRFMIIDASFCESNLQLLFTVVENAPSEVVRSNCTLSLGDLAVRFPNLLEPWTENMYA 1011

Query: 1007 RLGDPCISVRKNAVLVLSHLILNDMMKVKGYINEMAVRLEDEDERISNLAKLFFIELSKK 1066
            RL D  +SVRKNAVLVLSHLILNDMMKVKGYI EMA+ +ED+ ERIS+LAKLFF ELSKK
Sbjct: 1012 RLRDASVSVRKNAVLVLSHLILNDMMKVKGYIYEMAICIEDDVERISSLAKLFFHELSKK 1071

Query: 1067 GNNPIYNLLPDILSKLSKQNLSNDSFCNIMQFLIASIKKDRQMEALVEKLCNRFSGATDV 1126
            G+NPIYNLLPDIL +LS +NL  +SFCN+MQFLI SIKKD+QMEALVEKLCNRFSG TD 
Sbjct: 1072 GSNPIYNLLPDILGQLSNRNLERESFCNVMQFLIGSIKKDKQMEALVEKLCNRFSGVTDG 1131

Query: 1127 RQWQHISYCLSQLSFTEKGMKKLIELFKTYEHVLSEDSVMDHFRNIVNKGKKFAKLEMKS 1186
            +QW++ISY LS L+FTEKG+KKLIE FK+YEH L+ED V ++FR+I+NKGKKFAK E+K+
Sbjct: 1132 KQWEYISYSLSLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAKPELKA 1191

Query: 1187 CIEEFEDKLNKFHMEKKEQEVTARNAQIHQQKIDSRGGFNVATN-----SEDHSESNTVS 1241
            CIEEFE+K+NKFHMEKKEQE TARNA++H++K  +     V +       E++ E   VS
Sbjct: 1192 CIEEFEEKINKFHMEKKEQEETARNAEVHREKTKTMESLAVLSKVKEEPVEEYDEGEGVS 1251

Query: 1242 DETDSEVIDGCADET 1256
               DSE++D   +E+
Sbjct: 1252 ---DSEIVDPSMEES 1263


>AT3G57060.1 | Symbols:  | binding | chr3:21115078-21121051 REVERSE
            LENGTH=1396
          Length = 1396

 Score = 1764 bits (4570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1275 (68%), Positives = 1024/1275 (80%), Gaps = 31/1275 (2%)

Query: 1    MAPHFVFPRTLQDLEEESPEDN-RLCVQNPIDLASLRSSQLEEFVKGVSFDLSDKELLCV 59
            MAP FVFP+ L+ LEE+ PEDN RL  QNP+D+ SLR S LEEFVKGVSFDLSD+EL CV
Sbjct: 1    MAPPFVFPQILRALEED-PEDNHRLFAQNPVDVTSLRPSDLEEFVKGVSFDLSDRELFCV 59

Query: 60   EDHDVFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLLPNVDSLSRA---SEGDLPFLL 116
            ED DVFD                            +VLLPNVDS+SR+    E D+P ++
Sbjct: 60   EDQDVFDRVYSLVRSFFSLPPSCKCNLVESLRSNLSVLLPNVDSISRSVQDQEDDVP-II 118

Query: 117  DRLASHRNAFKIYTFFLLSIVLAEDXXXXXXXXXXXXXXXXXRKKQPAKSWNWEPQRARI 176
            DR+ SHRNA KIYTFFLL++V+ E+                 RKKQ  +SWNWEPQR R+
Sbjct: 119  DRITSHRNALKIYTFFLLTVVMNEESHISSVETTKVAARG--RKKQIIQSWNWEPQRGRM 176

Query: 177  LNLIANSLEINLELLFGSPDLDEGYLSFITKNTFSMFENTALLKDSDAKDALCRIIGACS 236
            LNLIANSLEINL LLFGS DLDE YLSFI KN+F++FEN  +LKD++ KDALCRIIGA +
Sbjct: 177  LNLIANSLEINLSLLFGSSDLDENYLSFIVKNSFTLFENATILKDAETKDALCRIIGASA 236

Query: 237  TKYHYTAQSCASIMHLIHKYDFVVTHMADAVAGAKKKYSDGTLATSLVRDIGRTNPKDYV 296
            TKYHY  QSCASIMHLIHKYDF V H+ADAVA A+ KYSDGTLA +++RDIGRT+PK YV
Sbjct: 237  TKYHYIVQSCASIMHLIHKYDFAVVHIADAVARAESKYSDGTLAVTIIRDIGRTDPKAYV 296

Query: 297  KDTAGAENVGRFLVELADRLPKLISTNIGILITHFGGESYKIRNALVAVLGKLIAKAFKD 356
            KDTAGA+NVGRFLVELADRLPKL+STN+G+L+ HFGGESYKIRNALV VLGKL+AKAF D
Sbjct: 297  KDTAGADNVGRFLVELADRLPKLMSTNVGVLVPHFGGESYKIRNALVGVLGKLVAKAFND 356

Query: 357  VDSAEVSSKSIRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 416
            V+  ++SSKS+RLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA
Sbjct: 357  VE-GDMSSKSLRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 415

Query: 417  EVAAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATLDQYXXXX-----XXXX 471
             ++AGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATL+QY             
Sbjct: 416  SLSAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATLEQYKRKLNELEPTEHA 475

Query: 472  SPSEGSDSENLNGNGEVEDLGIETVTKVQQESMTDTCMSQADDAVPLENSSSVPDVGNLE 531
            S    SD E+ NG+GE++DL +ET TK+ Q+S++D+C  +  + +  E   SVPD+GN+E
Sbjct: 476  SKESTSDGESCNGDGEIDDLHLETTTKIHQDSLSDSCQPENGEEIS-EKDVSVPDIGNVE 534

Query: 532  QTRALVASLEAGSRFSKCIGATMPTLVQLMASSSATDVENTILLLMRCKQFQIDGSEECL 591
            QT+AL+ASLEAG RFSKC+ A+MP LVQLMASSSATDVEN ILLLMRCKQFQIDG+E CL
Sbjct: 535  QTKALIASLEAGLRFSKCMSASMPILVQLMASSSATDVENAILLLMRCKQFQIDGAEACL 594

Query: 592  RKMLPLVFSQDKSIYEAVENAFHTIYIRKNPVETAKNLLSLATDSNIGDLAALEFIVGAL 651
            RK+LPL FSQDKSIYEAVENAF +IYIRKNPV+TAK LL+LA DSNIGD AALEFIV AL
Sbjct: 595  RKILPLAFSQDKSIYEAVENAFISIYIRKNPVDTAKQLLNLAIDSNIGDQAALEFIVNAL 654

Query: 652  VSKGDISSSTISALWDFFCFNVGGTTAEQSRGALSVLCMVAKKSSGALGSHLQDIIDIGF 711
            VSKG+ISSST SALWDFFCFN+ GTTAEQSRGALS+LCM AK S   LGSH+QDIIDIGF
Sbjct: 655  VSKGEISSSTTSALWDFFCFNINGTTAEQSRGALSILCMAAKSSPRILGSHIQDIIDIGF 714

Query: 712  GRWSKVDPLLARTACIAIERLSEDDKKKLLTNNNVRIFGILESIITGFWLPANIWYAAAD 771
            GRW+KV+PLLARTAC  I+R SE+D+KKLL ++  R+FGILES+ITG WLP NI+YA AD
Sbjct: 715  GRWAKVEPLLARTACTVIQRFSEEDRKKLLLSSGSRLFGILESLITGNWLPENIYYATAD 774

Query: 772  KAITALYAIHPTPETIAADLIKKFLNSVFNXXXXXXXXXXXX-----MPITVQGEKLSRF 826
            KAI+A+Y IHPTPET+A+ +IKK L++VF+                 +   VQ  KLSRF
Sbjct: 775  KAISAIYMIHPTPETLASTIIKKSLSTVFDVVEQEEAQTDTENNKVDILTPVQVAKLSRF 834

Query: 827  LFVISHIAMNQLVYIESCARKIQKQKLRKEEKDIQSQTADSNDKESNGTQKGNDINAELG 886
            LF +SHIAMNQLVYIESC +KI++QK +K++   +SQ  + N +    TQ+ N INAELG
Sbjct: 835  LFAVSHIAMNQLVYIESCIQKIRRQKTKKDKPAAESQNTEENLE---ATQENNGINAELG 891

Query: 887  FAASEDAALDALFEKAEKEIVSGGSNEKNLVGISATFLSKLCRNYGLLQKYPELQASAML 946
             AAS+DA LD L E+AE+EIVSGGS EKNL+G  ATFLSKLCRN+ LLQK+PELQASAML
Sbjct: 892  LAASDDALLDTLAERAEREIVSGGSVEKNLIGECATFLSKLCRNFSLLQKHPELQASAML 951

Query: 947  ALCRLMIIDADFCDANLQLQFTVVENANSETVRSNCTIALGDLAVRFPNLLEPWTENMYA 1006
            ALCR MIIDA FC++NLQL FTVVENA SE VRSNCT++LGDLAVRFPNLLEPWTENMYA
Sbjct: 952  ALCRFMIIDASFCESNLQLLFTVVENAPSEVVRSNCTLSLGDLAVRFPNLLEPWTENMYA 1011

Query: 1007 RLGDPCISVRKNAVLVLSHLILNDMMKVKGYINEMAVRLEDEDERISNLAKLFFIELSKK 1066
            RL D  +SVRKNAVLVLSHLILNDMMKVKGYI EMA+ +ED+ ERIS+LAKLFF ELSKK
Sbjct: 1012 RLRDASVSVRKNAVLVLSHLILNDMMKVKGYIYEMAICIEDDVERISSLAKLFFHELSKK 1071

Query: 1067 GNNPIYNLLPDILSKLSKQNLSNDSFCNIMQFLIASIKKDRQMEALVEKLCNRFSGATDV 1126
            G+NPIYNLLPDIL +LS +NL  +SFCN+MQFLI SIKKD+QMEALVEKLCNRFSG TD 
Sbjct: 1072 GSNPIYNLLPDILGQLSNRNLERESFCNVMQFLIGSIKKDKQMEALVEKLCNRFSGVTDG 1131

Query: 1127 RQWQHISYCLSQLSFTEKGMKKLIELFKTYEHVLSEDSVMDHFRNIVNKGKKFAKLEMKS 1186
            +QW++ISY LS L+FTEKG+KKLIE FK+YEH L+ED V ++FR+I+NKGKKFAK E+K+
Sbjct: 1132 KQWEYISYSLSLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAKPELKA 1191

Query: 1187 CIEEFEDKLNKFHMEKKEQEVTARNAQIHQQKIDSRGGFNVATN-----SEDHSESNTVS 1241
            CIEEFE+K+NKFHMEKKEQE TARNA++H++K  +     V +       E++ E   VS
Sbjct: 1192 CIEEFEEKINKFHMEKKEQEETARNAEVHREKTKTMESLAVLSKVKEEPVEEYDEGEGVS 1251

Query: 1242 DETDSEVIDGCADET 1256
               DSE++D   +E+
Sbjct: 1252 ---DSEIVDPSMEES 1263


>AT4G15890.1 | Symbols:  | binding | chr4:9017453-9022745 FORWARD
            LENGTH=1314
          Length = 1314

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 930  NYGLLQKYPELQASAMLALCRLMIIDADFCDANLQLQFTVVENANSETVRSNCTIALGDL 989
            N  L QK P L + + L + ++ + D       L L    +E ++   +R+N  +A+ D 
Sbjct: 852  NVCLKQKAPLLYSQSWLTMAKMCLADGKLAKRYLPLFAQELEKSDCAALRNNLVVAMTDF 911

Query: 990  AVRFPNLLEPWTENMYARLGDPCISVRKNAVLVLSHLILNDMMKVKGYIN-EMAVRLEDE 1048
             V +  ++E +   +  RL DPC  VR+   ++LS L+  D +K +G +     + L DE
Sbjct: 912  CVHYTAMIECYIPKITKRLRDPCEVVRRQTFILLSRLLQRDYVKWRGVLFLRFLLSLVDE 971

Query: 1049 DERISNLAKLFF 1060
             E+I  LA   F
Sbjct: 972  SEKIRRLADFLF 983