Miyakogusa Predicted Gene

Lj0g3v0344619.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0344619.1 Non Chatacterized Hit- tr|C5Z771|C5Z771_SORBI
Putative uncharacterized protein Sb10g026020
OS=Sorghu,48.31,3e-16,CALMODULIN-BINDING PROTEIN-RELATED,NULL; FAMILY
NOT NAMED,NULL; coiled-coil,NULL,CUFF.23646.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10680.1 | Symbols:  | calmodulin-binding protein-related | c...   131   1e-31
AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | ch...   125   7e-30

>AT5G10680.1 | Symbols:  | calmodulin-binding protein-related |
           chr5:3373584-3374309 FORWARD LENGTH=241
          Length = 241

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 88/118 (74%), Gaps = 3/118 (2%)

Query: 1   MEKDSIEDMEIEVLPSMWPEDIVTDVGKQFNIEKPGMDQDMLEDVITTIEE-PTIVDFKR 59
           ME + IE+M++EVL SMWPE++  +  KQFN+EKP +D DML++V  TIEE PTI D  R
Sbjct: 1   METNQIEEMDVEVLSSMWPENVGPEADKQFNVEKPAIDLDMLKEV--TIEEKPTIADLTR 58

Query: 60  LMELTSFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRHDVELRKVEILEEH 117
           L EL S T++GSSQL  L+K WEY Q N  RLLREEL NL +QR + E ++++I+EE+
Sbjct: 59  LPELLSLTQQGSSQLTNLVKQWEYMQNNAVRLLREELKNLDRQREEAEAKELKIIEEY 116


>AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 |
           chr5:3386835-3390541 FORWARD LENGTH=922
          Length = 922

 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 2/118 (1%)

Query: 1   MEKDSIEDMEIEVLPSMWPEDIVTDVGKQFNIEKPGMDQDMLEDVITTIEEPTIVDFKRL 60
           ME D IE+M++EVL SMWPED+ T+  KQFN+EKP  D D L++V  TIE  TI D  RL
Sbjct: 5   METDQIEEMDVEVLSSMWPEDVGTEADKQFNVEKPAGDLDTLKEV--TIETRTIADMTRL 62

Query: 61  MELTSFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRHDVELRKVEILEEHR 118
             L + T +GSSQL  L+K WEY Q N  RLL+EEL NL +QR + E ++++I+EE++
Sbjct: 63  PNLLNSTHQGSSQLTNLVKQWEYMQDNAVRLLKEELKNLDRQREEAEAKELKIIEEYK 120