Miyakogusa Predicted Gene

Lj0g3v0344449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0344449.1 Non Chatacterized Hit- tr|K4B8C7|K4B8C7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,32.56,0.0000000009,bromo domain,Bromodomain; seg,NULL;
Bromodomain,Bromodomain; no description,Bromodomain,CUFF.23632.1
         (308 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46550.1 | Symbols:  | DNA-binding bromodomain-containing pro...    62   4e-10
AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal doma...    60   3e-09
AT5G14270.1 | Symbols: ATBET9, BET9 | bromodomain and extratermi...    60   3e-09
AT1G06230.3 | Symbols: GTE4 | global transcription factor group ...    51   8e-07
AT1G06230.2 | Symbols: GTE4 | global transcription factor group ...    51   8e-07
AT1G06230.1 | Symbols: GTE4 | global transcription factor group ...    51   8e-07
AT1G73150.1 | Symbols: GTE3 | global transcription factor group ...    51   1e-06
AT3G27260.1 | Symbols: GTE8 | global transcription factor group ...    50   2e-06
AT3G27260.2 | Symbols: GTE8 | global transcription factor group ...    50   2e-06
AT5G63320.3 | Symbols: NPX1 | nuclear protein X1 | chr5:25377180...    49   3e-06
AT5G63320.2 | Symbols: NPX1 | nuclear protein X1 | chr5:25377180...    49   3e-06
AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 | chr5:25374413...    49   4e-06
AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extrater...    49   5e-06

>AT5G46550.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr5:18884439-18886503 REVERSE LENGTH=494
          Length = 494

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEP 250
           Q   +L+ +M  R GW FK P+DP   E +    N  +KP+ LG V  +SKL   +YS  
Sbjct: 72  QCLALLRFLMEHRGGWLFKEPVDPVKME-IPDYFNVIQKPMDLGTV--KSKLLKNVYSNA 128

Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
           ++F  D+R  F++A+ Y P  +EVH I + +++ FE  W +L KK
Sbjct: 129 DEFAADVRLTFANAMHYNPLWNEVHTIAKEINEIFEVRWESLMKK 173


>AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal domain
           protein 9 | chr5:4605173-4608517 FORWARD LENGTH=689
          Length = 689

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 136 FELFKDSTCMSVSSSVDTTARSNG-----TRPKWIKTEQPANDSRTGSEESEKKMELYKK 190
           FEL +     S S+S  T  +S G     T P   KT  P + +   +  +   M L K 
Sbjct: 83  FELSRTVALTSSSASGLTRVKSFGMSRCSTGPG--KTVNPISAASKPTPVTTAVMLLMK- 139

Query: 191 MQLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSE 249
            Q   +LKR+M  + GW F  P+D     ++L   N  + P+ LG V  ++KL +  YS 
Sbjct: 140 -QCEALLKRLMSHQYGWVFNTPVDVV-KLNILDYFNVIEHPMDLGTV--KNKLTSGTYSC 195

Query: 250 PEQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWAS 297
           P +F  D+R  FS+A+ Y P  ++V+++   L   FE  W TL+KK + 
Sbjct: 196 PSEFAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKLSG 244


>AT5G14270.1 | Symbols: ATBET9, BET9 | bromodomain and extraterminal
           domain protein 9 | chr5:4605173-4608517 FORWARD
           LENGTH=688
          Length = 688

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 136 FELFKDSTCMSVSSSVDTTARSNG-----TRPKWIKTEQPANDSRTGSEESEKKMELYKK 190
           FEL +     S S+S  T  +S G     T P   KT  P + +   +  +   M L K 
Sbjct: 83  FELSRTVALTSSSASGLTRVKSFGMSRCSTGPG--KTVNPISAASKPTPVTTAVMLLMK- 139

Query: 191 MQLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSE 249
            Q   +LKR+M  + GW F  P+D     ++L   N  + P+ LG V  ++KL +  YS 
Sbjct: 140 -QCEALLKRLMSHQYGWVFNTPVDVV-KLNILDYFNVIEHPMDLGTV--KNKLTSGTYSC 195

Query: 250 PEQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWAS 297
           P +F  D+R  FS+A+ Y P  ++V+++   L   FE  W TL+KK + 
Sbjct: 196 PSEFAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKLSG 244


>AT1G06230.3 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPEQF 253
            +L+R+M  + GW F  P+D      LL      + P+ LG   I+S L   LY  P +F
Sbjct: 427 ALLERLMKHKHGWVFNAPVD-VKGLGLLDYYTIIEHPMDLGT--IKSALMKNLYKSPREF 483

Query: 254 VDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
            +D+R  F +A+ Y P   +VH++   L   FE  W  ++  +  E R
Sbjct: 484 AEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMR 531


>AT1G06230.2 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPEQF 253
            +L+R+M  + GW F  P+D      LL      + P+ LG   I+S L   LY  P +F
Sbjct: 427 ALLERLMKHKHGWVFNAPVD-VKGLGLLDYYTIIEHPMDLGT--IKSALMKNLYKSPREF 483

Query: 254 VDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
            +D+R  F +A+ Y P   +VH++   L   FE  W  ++  +  E R
Sbjct: 484 AEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMR 531


>AT1G06230.1 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPEQF 253
            +L+R+M  + GW F  P+D      LL      + P+ LG   I+S L   LY  P +F
Sbjct: 427 ALLERLMKHKHGWVFNAPVD-VKGLGLLDYYTIIEHPMDLGT--IKSALMKNLYKSPREF 483

Query: 254 VDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
            +D+R  F +A+ Y P   +VH++   L   FE  W  ++  +  E R
Sbjct: 484 AEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMR 531


>AT1G73150.1 | Symbols: GTE3 | global transcription factor group E3
           | chr1:27504327-27505996 REVERSE LENGTH=461
          Length = 461

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)

Query: 196 ILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPEQFV 254
           +L ++M  + GW F  P+D   +  L    N  K+P+ LG V  +++L   LY  P +F 
Sbjct: 126 LLTKLMKHKSGWIFNTPVDVV-TLGLHDYHNIIKEPMDLGTV--KTRLSKSLYKSPLEFA 182

Query: 255 DDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDRKQKRSKKV 308
           +D+R  F++A++Y P   +V+ +   L + FE  W  L+ ++    RKQ+  + +
Sbjct: 183 EDVRLTFNNAMLYNPVGHDVYHMAEILLNLFEEKWVPLETQYELLIRKQQPVRDI 237


>AT3G27260.1 | Symbols: GTE8 | global transcription factor group E8
           | chr3:10068411-10072403 FORWARD LENGTH=813
          Length = 813

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 238 IESKLKNWLYSEPEQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKW 295
           ++  L + +YS P +F  D+R  F++A+ Y P   +VHI+G  LS  FE  W T+KKK 
Sbjct: 223 VKKNLASGVYSSPHEFAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTIKKKL 281


>AT3G27260.2 | Symbols: GTE8 | global transcription factor group E8
           | chr3:10068558-10072403 FORWARD LENGTH=764
          Length = 764

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 238 IESKLKNWLYSEPEQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKW 295
           ++  L + +YS P +F  D+R  F++A+ Y P   +VHI+G  LS  FE  W T+KKK 
Sbjct: 174 VKKNLASGVYSSPHEFAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTIKKKL 232


>AT5G63320.3 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25377180-25378783 REVERSE LENGTH=477
          Length = 477

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPEQF 253
            +L R+   + GW F+ P+DP    ++    N  K P+ LG   I S+L    YS P  F
Sbjct: 167 TLLNRLWSHKSGWPFRTPVDPV-MLNIPDYFNVIKHPMDLG--TIRSRLCKGEYSSPLDF 223

Query: 254 VDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
             D+R  FS+++ Y P  ++ H + + +S  FE  W +++KK
Sbjct: 224 AADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKK 265


>AT5G63320.2 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25377180-25378783 REVERSE LENGTH=477
          Length = 477

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPEQF 253
            +L R+   + GW F+ P+DP    ++    N  K P+ LG   I S+L    YS P  F
Sbjct: 167 TLLNRLWSHKSGWPFRTPVDPV-MLNIPDYFNVIKHPMDLG--TIRSRLCKGEYSSPLDF 223

Query: 254 VDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
             D+R  FS+++ Y P  ++ H + + +S  FE  W +++KK
Sbjct: 224 AADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKK 265


>AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25374413-25378783 REVERSE LENGTH=1061
          Length = 1061

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEK--NKKKKPI-LGFVDIESKLKNWLYS 248
           +   +L R+   + GW F+ P+DP     L +    N  K P+ LG   I S+L    YS
Sbjct: 164 ECETLLNRLWSHKSGWPFRTPVDPV---MLNIPDYFNVIKHPMDLGT--IRSRLCKGEYS 218

Query: 249 EPEQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
            P  F  D+R  FS+++ Y P  ++ H + + +S  FE  W +++KK
Sbjct: 219 SPLDFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKK 265


>AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and
           extraterminal domain protein 10 | chr3:275582-278386
           REVERSE LENGTH=620
          Length = 620

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 22/164 (13%)

Query: 145 MSVSSSVDTTARSNGTRPKWIKTEQPANDS-------RTGSEESEKKMELYKKMQLWVIL 197
           + +S  V +T  SN +RPK     + +               E      + +  Q   +L
Sbjct: 78  LPISKIVTSTPASNVSRPKSFGMSRCSTGPGKRVLPFTATKPEPVTTSTMLRMKQCESLL 137

Query: 198 KRMMIGRDGWAFKHPLDPF-----DSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEPE 251
           KR+M  +  W F  P+D       D  +++      K P+ LG V  +SKL +  YS P 
Sbjct: 138 KRLMSQQHCWLFNTPVDVVKLNIPDYFTII------KHPMDLGTV--KSKLTSGTYSSPS 189

Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
           +F  D+R  F +A+ Y PS + V+     LS  FE  W T++KK
Sbjct: 190 EFSADVRLTFRNAMTYNPSDNNVYRFADTLSKFFEVRWKTIEKK 233