Miyakogusa Predicted Gene
- Lj0g3v0344429.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0344429.2 Non Chatacterized Hit- tr|Q6K844|Q6K844_ORYSJ
Putative uncharacterized protein OJ1548_F12.19
OS=Oryz,64.63,2e-19,BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN,Basic
helix-loop-helix leucine zipper transcription fac,CUFF.23650.2
(102 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 96 6e-21
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 88 1e-18
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 84 2e-17
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 84 2e-17
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 80 4e-16
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 80 4e-16
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 79 5e-16
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 72 6e-14
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 72 9e-14
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 72 9e-14
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 70 4e-13
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 70 4e-13
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 70 4e-13
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 70 4e-13
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 66 4e-12
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 66 4e-12
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 7e-12
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l... 65 1e-11
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 63 3e-11
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 4e-11
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 4e-11
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 1e-10
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 61 2e-10
AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 61 2e-10
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 58 1e-09
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 57 3e-09
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 56 5e-09
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 1e-08
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 2e-08
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503... 53 3e-08
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 4e-08
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 4e-08
AT5G67110.3 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 53 4e-08
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loop... 52 7e-08
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 7e-08
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 1e-07
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 1e-07
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953... 51 2e-07
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 50 2e-07
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 50 3e-07
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 50 3e-07
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 50 3e-07
AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 3e-07
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 4e-07
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 4e-07
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 4e-07
AT5G67110.2 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 50 4e-07
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:219... 50 4e-07
AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21... 49 5e-07
AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 6e-07
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 6e-07
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 6e-07
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 6e-07
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 49 6e-07
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 49 6e-07
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 7e-07
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 49 8e-07
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 49 8e-07
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 49 8e-07
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 49 9e-07
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 9e-07
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 9e-07
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 1e-06
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-... 48 1e-06
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel... 48 1e-06
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 48 1e-06
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loo... 47 2e-06
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 47 2e-06
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 47 2e-06
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 47 2e-06
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 47 4e-06
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 45 7e-06
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896... 45 8e-06
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/54 (88%), Positives = 50/54 (92%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS KRRRSRINE MKALQ+LIPNSNKTDKA MLDEAI+YLKQLQLQVQ
Sbjct: 198 AAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 251
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 49/55 (89%)
Query: 30 AEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
A+ NLS K+RRS+INE MKALQ LIPNSNKTDKA MLDEAI+YLKQLQLQVQ++
Sbjct: 95 AQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTL 149
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
+AEV NLS +RRR RINE M+ALQ LIPN NK DKA MLDEAI+YLK LQLQVQ
Sbjct: 344 SAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
+AEV NLS +RRR RINE M+ALQ LIPN NK DKA MLDEAI+YLK LQLQVQ
Sbjct: 344 SAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/59 (67%), Positives = 47/59 (79%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVPQG 87
AAEV NLS ++RR RINE MKALQ LIP NK+DKA MLDEAI+Y+K LQLQ+Q + G
Sbjct: 285 AAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMG 343
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/59 (67%), Positives = 47/59 (79%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVPQG 87
AAEV NLS ++RR RINE MKALQ LIP NK+DKA MLDEAI+Y+K LQLQ+Q + G
Sbjct: 285 AAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMG 343
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/59 (67%), Positives = 47/59 (79%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVPQG 87
AAEV NLS ++RR RINE MKALQ LIP NK+DKA MLDEAI+Y+K LQLQ+Q + G
Sbjct: 214 AAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMG 272
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/53 (64%), Positives = 42/53 (79%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQV 81
AA + N S ++RR +IN+ MK LQ L+PNS+KTDKA MLDE I+YLKQLQ QV
Sbjct: 214 AAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQV 266
>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
Length = 430
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS +RRR RINE MKALQ LIP+ +KTDKA +LDEAIDYLK LQLQ+Q
Sbjct: 258 AAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
Length = 428
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS +RRR RINE MKALQ LIP+ +KTDKA +LDEAIDYLK LQLQ+Q
Sbjct: 258 AAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS +RRR RINE MKALQ LIP+ ++TDKA +LDEAIDYLK LQ+Q+Q
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS +RRR RINE MKALQ LIP+ ++TDKA +LDEAIDYLK LQ+Q+Q
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS +RRR RINE MKALQ LIP+ ++TDKA +LDEAIDYLK LQ+Q+Q
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
Length = 442
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AAEV NLS +RRR RINE MKALQ LIP+ ++TDKA +LDEAIDYLK LQ+Q+Q
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A + +++ + RR RI E MK+LQ L+PN NKTDKA MLDE IDY+K LQLQV+
Sbjct: 137 ATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVK 190
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A + +++ + RR RI E MKALQ L+PN NKTDKA MLDE IDY+K LQLQV+
Sbjct: 145 ATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVK 198
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVPQGL 88
AA + LS +RRR +INE MKALQ L+P KTD++ MLD+ I+Y+K LQ Q+Q G
Sbjct: 278 AAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMGH 337
Query: 89 ISFP 92
+ P
Sbjct: 338 VMIP 341
>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
1 | chr2:19295617-19297678 REVERSE LENGTH=416
Length = 416
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ--SVPQ 86
+ EV L ++RR N+ M+ALQ+L+PN K DKA +LDEAI Y++ LQLQVQ S+
Sbjct: 230 STEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSMGN 289
Query: 87 GLISFP 92
GLI P
Sbjct: 290 GLIRPP 295
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A + +++ + RR RI E MK+LQ L+PN+NKTDKA MLDE I+Y++ LQLQV+
Sbjct: 106 ATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVK 159
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQV 81
AAE+ NL+ +RRR +INE MK LQ LIP NK+ K ML++ I+Y+K L++Q+
Sbjct: 151 AAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQI 203
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 62.8 bits (151), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 30 AEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
AE+ NL+ +RRR +INE MK LQ LIP NK+ K LD+AI+Y+K LQ Q+Q +
Sbjct: 257 AEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM 311
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AA + LS +RRR +INE MKALQ L+P KTD++ MLD+ I+Y+K LQ Q+Q
Sbjct: 278 AAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990546 REVERSE LENGTH=363
Length = 363
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 30 AEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVPQG 87
AE N + +R+ IN+ M+ LQNL+PNS+K D MLDEAI+Y+ LQLQVQ + G
Sbjct: 190 AEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQMMTMG 247
>AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990495 REVERSE LENGTH=346
Length = 346
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 30 AEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVPQG 87
AE N + +R+ IN+ M+ LQNL+PNS+K D MLDEAI+Y+ LQLQVQ + G
Sbjct: 173 AEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQMMTMG 230
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A + +L ++RR +INE +K LQNL+PN K D + ML+EA+ Y+K LQLQ++
Sbjct: 174 ATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIK 227
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A + +L ++RR RINE ++ LQNL+PN K D + ML+EA+ Y+K LQLQ++
Sbjct: 273 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIK 326
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 55.8 bits (133), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A + +L ++RR RINE ++ LQ+L+PN K D + ML+EA+ Y+K LQLQ++
Sbjct: 244 ATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIK 297
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 40/54 (74%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
A++ +L ++RR RIN+ +K LQ+L+PN K D + ML++A+ Y+K LQLQ++
Sbjct: 139 ASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIK 192
>AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=341
Length = 341
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 38 KRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
++RR RINE ++ LQ+L+PN K D + ML+EA+ Y+K LQLQ++
Sbjct: 266 QKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIK 310
>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
chr5:15036197-15037574 FORWARD LENGTH=307
Length = 307
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 34 NLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
+L+ K RR RI+E +K LQ L+PN K D ML++AI Y+K LQ+QV+
Sbjct: 213 SLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVK 261
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I+E M+ LQNL+P +K T KA MLDE I+Y++ LQ QV+ +
Sbjct: 143 ATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMK 202
Query: 88 LIS 90
L S
Sbjct: 203 LTS 205
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I+E M+ LQNL+P +K T KA MLDE I+Y++ LQ QV+ +
Sbjct: 143 ATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMK 202
Query: 88 LIS 90
L S
Sbjct: 203 LTS 205
>AT5G67110.3 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=188
Length = 188
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 36 SGKRRRSRINENMKA-LQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
SG ++R+ + N+ A NL S KTDKA MLDEAI+YLKQLQLQVQ++
Sbjct: 81 SGAKQRNSLKRNIDAQFHNL---SEKTDKASMLDEAIEYLKQLQLQVQTL 127
>AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr1:465933-467685 REVERSE LENGTH=292
Length = 292
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 38 KRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
+RR +++ M+ LQ L+PN +KTDK +LD+ I+Y+K LQLQ+Q
Sbjct: 144 RRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQ 188
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2341188-2343288 REVERSE
LENGTH=456
Length = 456
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A + +L+ + RR +I+E MK LQ+L+P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 265 ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 319
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684160-19686871 FORWARD
LENGTH=498
Length = 498
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A + +L+ + RR +I E MK LQ+L+P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 308 ATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 362
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
++ ++RR RI+E ++ LQ L+P K D A MLDEA +YLK L+ QV+++
Sbjct: 282 VAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKAL 331
>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
chr1:24795326-24796598 FORWARD LENGTH=298
Length = 298
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
L+ K RR RI+E +K LQ L+PN K D ML++AI Y+K LQ+QV+
Sbjct: 208 LAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVK 255
>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640031 REVERSE LENGTH=278
Length = 278
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 40/54 (74%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AA + N S +RRR RIN+ M+ LQ L+P ++K DK +LD+ I++LKQLQ QVQ
Sbjct: 79 AAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQ 132
>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=302
Length = 302
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I++ MK LQ+++P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 148 ATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE----- 202
Query: 88 LISFPFISMNVIV 100
F+SM + V
Sbjct: 203 -----FLSMKLSV 210
>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=304
Length = 304
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I++ MK LQ+++P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 148 ATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE----- 202
Query: 88 LISFPFISMNVIV 100
F+SM + V
Sbjct: 203 -----FLSMKLSV 210
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 40/54 (74%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AA + N S +RRR RIN+ M+ LQ L+P ++K DK +LD+ I++LKQLQ QVQ
Sbjct: 167 AAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQ 220
>AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14225335-14227840 FORWARD
LENGTH=544
Length = 544
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
AA++ NLS +RRR RINE MK LQ L+P KTDK ML++ I+Y+K LQLQ+Q
Sbjct: 358 AADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYVKSLQLQIQ 411
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=485
Length = 485
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +L+ + RR +I+E MK LQ+L+P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 309 ATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 363
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +L+ + RR +I+E MK LQ+L+P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 310 ATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +L+ + RR +I+E MK LQ+L+P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 310 ATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364
>AT5G67110.2 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785684-26786338
REVERSE LENGTH=150
Length = 150
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 30 AEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAI 71
A+ NLS K+RRS+INE MKALQ LIPNSNK +++ E +
Sbjct: 95 AQFHNLSEKKRRSKINEKMKALQKLIPNSNKVNQSLFESEIV 136
>AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P |
chr1:21909635-21911030 REVERSE LENGTH=343
Length = 343
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKT-DKAFMLDEAIDYLKQLQLQVQ 82
A + +L+ + RR +I+E MK LQ+L+P NK KA +LDE I+Y++ LQ QV+
Sbjct: 143 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 197
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P |
chr1:21909464-21911030 REVERSE LENGTH=264
Length = 264
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNKT-DKAFMLDEAIDYLKQLQLQVQ 82
A + +L+ + RR +I+E MK LQ+L+P NK KA +LDE I+Y++ LQ QV+
Sbjct: 143 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 197
>AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:16791098-16792027 FORWARD
LENGTH=254
Length = 254
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSVP 85
L+ KRRR RIN ++ AL+ L+PNS+K DKA +L I+ +K+L+ + P
Sbjct: 69 LAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESP 119
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=335
Length = 335
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I++ MK LQ+++P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 192 ATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE----- 246
Query: 88 LISFPFISMNVIV 100
F+SM + V
Sbjct: 247 -----FLSMKLAV 254
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=337
Length = 337
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I++ MK LQ+++P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 192 ATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE----- 246
Query: 88 LISFPFISMNVIV 100
F+SM + V
Sbjct: 247 -----FLSMKLAV 254
>AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952546-7954446 REVERSE
LENGTH=364
Length = 364
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQG 87
A + +L+ + RR +I++ MK LQ+++P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 192 ATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE----- 246
Query: 88 LISFPFISMNVIV 100
F+SM + V
Sbjct: 247 -----FLSMKLAV 254
>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +L+ + RR +I+E MK LQ+L+P +K T KA MLDE I+Y++ LQ Q++
Sbjct: 230 ATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIE 284
>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +L+ + RR +I+E MK LQ+L+P +K T KA MLDE I+Y++ LQ Q++
Sbjct: 230 ATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIE 284
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528933-8530655 REVERSE
LENGTH=371
Length = 371
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A + +L+ + RR +I+E M LQ+L+P N+ T KA MLDE I+Y++ LQ QV+
Sbjct: 198 ATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVE 252
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
LS K+RR ++NE L+++IP+ +K DK +LD+ I+YL+ LQ +VQ +
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
LS K+RR ++NE L+++IP+ +K DK +LD+ I+YL+ LQ +VQ +
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
LS K+RR ++NE L+++IP+ +K DK +LD+ I+YL+ LQ +VQ +
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 38 KRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
K+RR ++NE L+ +IP+ NK DK +LD+ I+YL++L+ +VQ +
Sbjct: 447 KKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQEL 493
>AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931680-17935639 REVERSE
LENGTH=309
Length = 309
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 34 NLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQSVPQGL 88
+++ + RR+RI+ +K LQ L+PN +K T A MLD A++++K LQ QV+S+ +G+
Sbjct: 243 SIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVESLEKGM 298
>AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304228-3305984 REVERSE
LENGTH=366
Length = 366
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +L+ + RR +I+E M+ LQ L+P NK T KA MLDE I+Y++ LQ QV+
Sbjct: 213 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 267
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25133117-25134600 REVERSE
LENGTH=281
Length = 281
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A + +L+ + RR +I+E M ALQ++IP NK KA +LDE I+Y++ LQ QV+
Sbjct: 160 ATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVE 214
>AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:9684858-9686321
FORWARD LENGTH=320
Length = 320
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 35 LSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV 84
L+ ++RR ++NE + AL L+P KTDKA +L++AI +LKQLQ +V+ +
Sbjct: 135 LAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKL 184
>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
basic-helix-loop-helix 1 | chr4:16498466-16499946
FORWARD LENGTH=335
Length = 335
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A + +++ + RR +I+E MK LQ+L+P +K T KA MLDE I+Y++ LQ Q++
Sbjct: 179 ATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=339
Length = 339
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 34 NLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
+L+ + RR +I+E MK LQ+L+P +K T KA MLDE I+Y++ LQ Q++
Sbjct: 184 SLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIE 233
>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr4:42601-43197 REVERSE LENGTH=198
Length = 198
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 37 GKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQSV-PQGLISFPF 93
+RRR RI+E ++ L+ ++P K D A MLDEAI Y K L+ QV+ + P I P
Sbjct: 127 ARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQIGAPM 184
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 40 RRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
RR+RI++ ++ LQ L+PN +K T+ A ML+EA++Y+K LQ Q+Q
Sbjct: 199 RRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQ 242
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +++ + RR+RI++ ++ LQ L+PN +K T+ A ML+EA++Y+K LQ Q+Q
Sbjct: 191 ATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQ 245
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611428-17613163 REVERSE
LENGTH=359
Length = 359
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 29 AAEVLNLSGKRRRSRINENMKALQNLIPNSNK-TDKAFMLDEAIDYLKQLQLQVQ 82
A +++ + RR+RI+E M+ LQ L+PN +K T+ + MLD A+DY+K LQ Q +
Sbjct: 286 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYK 340
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 34 NLSGKRRRSRINENMKALQNLIPNSN-KTDKAFMLDEAIDYLKQLQLQVQSVPQ 86
+++ + RR++I+E M+ LQ+L+PN + +T+ A MLD A+ Y+K LQ QV+++ +
Sbjct: 316 SIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEE 369
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 35/45 (77%)
Query: 38 KRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQ 82
++RR ++N+ AL++++PN +K DKA +L +AI Y+K+LQ +V+
Sbjct: 401 RQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVK 445
>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=912
Length = 912
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 34 NLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQV 81
+++ + RR RI++ K LQ+++P K D MLDEAI Y+K L+ Q+
Sbjct: 49 SVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQI 96