Miyakogusa Predicted Gene

Lj0g3v0344349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0344349.1 tr|D7KRJ0|D7KRJ0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,80,0.000000000000002,RRM_1,RNA recognition motif domain; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,,NODE_48006_length_829_cov_50.727383.path1.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    88   1e-18
AT5G54580.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    67   2e-12
AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    57   2e-09
AT3G20930.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    54   2e-08
AT5G59860.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    54   2e-08
AT5G06210.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...    50   2e-07
AT2G27330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   1e-06
AT2G37510.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   2e-06
AT4G36960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    45   8e-06
AT4G36960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    45   8e-06

>AT1G73530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:27643801-27645386 REVERSE LENGTH=181
          Length = 181

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 46/50 (92%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSEL 50
           MDK+ANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK RS++
Sbjct: 110 MDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159


>AT5G54580.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22171332-22172656 FORWARD LENGTH=156
          Length = 156

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQR 61
           D+++   +GF F+RYAT E+S K I GM GKFLDG VIF E A+PR + +    QN M R
Sbjct: 90  DRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMSR 149


>AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr3:16912511-16913250 REVERSE LENGTH=102
          Length = 102

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQN 57
          D    RP+GF F+ + +E++++KA++ + GK +DGR+IFVEVAK   E+R     N
Sbjct: 41 DSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVRAGINSN 96


>AT3G20930.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:7331739-7333749 FORWARD LENGTH=374
          Length = 374

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 5/60 (8%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQ 60
           MDK++ R +G+AFL Y TEE +  A++ M+GK ++G +I V+VAK +      F+QN  Q
Sbjct: 315 MDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKP-----FRQNRSQ 369


>AT5G59860.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24113462-24114449 FORWARD LENGTH=157
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 35/44 (79%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAK 45
           D+   RP+GF F+ + +E+++QKA++ ++GK ++GR+IFVE AK
Sbjct: 100 DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143


>AT5G06210.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:1878497-1879515 FORWARD LENGTH=146
          Length = 146

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 37/50 (74%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSEL 50
           MD++++R +GF F+ +A+ +E+QKA+   +G+ L+GR IFV+ AK +  L
Sbjct: 67  MDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSL 116


>AT2G27330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr2:11695350-11696563 REVERSE LENGTH=116
          Length = 116

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 35/45 (77%)

Query: 1  MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAK 45
          MDK+  RP+GFA++ ++++EE++KA+  ++ + +DGRV+ ++  K
Sbjct: 54 MDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTK 98


>AT2G37510.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:15743112-15744504 REVERSE LENGTH=142
          Length = 142

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVE 42
           D+ + R +GF F+ YAT E+++KA   M+ KFLDG VIFV+
Sbjct: 68  DRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108


>AT4G36960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr4:17427349-17429589 FORWARD LENGTH=379
          Length = 379

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNT 58
          D+   R RGF ++ +A+ E+++ A++G H  FL  R++ V+VA P+ E+RQ  ++ T
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNRILEVKVATPKEEMRQPAKKVT 91


>AT4G36960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr4:17427349-17429589 FORWARD LENGTH=379
          Length = 379

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNT 58
          D+   R RGF ++ +A+ E+++ A++G H  FL  R++ V+VA P+ E+RQ  ++ T
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNRILEVKVATPKEEMRQPAKKVT 91