Miyakogusa Predicted Gene

Lj0g3v0344069.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0344069.1 tr|A9TEZ0|A9TEZ0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_91885
,53.01,1e-16,seg,NULL,NODE_26385_length_636_cov_192.795593.path2.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39950.1 | Symbols:  | unknown protein; Has 978 Blast hits to...   146   7e-36
AT2G39950.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   120   3e-28

>AT2G39950.1 | Symbols:  | unknown protein; Has 978 Blast hits to
           254 proteins in 81 species: Archae - 0; Bacteria - 8;
           Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0;
           Other Eukaryotes - 767 (source: NCBI BLink). |
           chr2:16676758-16680204 REVERSE LENGTH=636
          Length = 636

 Score =  146 bits (368), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/111 (63%), Positives = 84/111 (75%), Gaps = 4/111 (3%)

Query: 44  LTERLTDVLVDEGDSDLLIQQTNREDRLLLWLQALDMQVVGACRADERLKPLLKMNTACG 103
           +  R++D L D    D L+     EDR+L WLQALDMQV+GACR DERLKPLLK+N + G
Sbjct: 50  IESRVSDPLTDATGGDFLVG----EDRVLRWLQALDMQVMGACRGDERLKPLLKLNVSNG 105

Query: 104 VAEDPLLAQLTQHFEPSEVGMLARCFCVPLVSIRVGKIHNEGTRFCPTDIR 154
           +AED LLA L+QHFEP+E+GMLARCFC+PLVS+RVGKI  EG    PT IR
Sbjct: 106 MAEDRLLAHLSQHFEPAEIGMLARCFCIPLVSVRVGKIIKEGILMRPTPIR 156


>AT2G39950.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; Has 941
           Blast hits to 229 proteins in 79 species: Archae - 0;
           Bacteria - 8; Metazoa - 89; Fungi - 54; Plants - 41;
           Viruses - 0; Other Eukaryotes - 749 (source: NCBI
           BLink). | chr2:16676758-16679961 REVERSE LENGTH=555
          Length = 555

 Score =  120 bits (302), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/75 (72%), Positives = 63/75 (84%)

Query: 80  MQVVGACRADERLKPLLKMNTACGVAEDPLLAQLTQHFEPSEVGMLARCFCVPLVSIRVG 139
           MQV+GACR DERLKPLLK+N + G+AED LLA L+QHFEP+E+GMLARCFC+PLVS+RVG
Sbjct: 1   MQVMGACRGDERLKPLLKLNVSNGMAEDRLLAHLSQHFEPAEIGMLARCFCIPLVSVRVG 60

Query: 140 KIHNEGTRFCPTDIR 154
           KI  EG    PT IR
Sbjct: 61  KIIKEGILMRPTPIR 75