Miyakogusa Predicted Gene

Lj0g3v0343559.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343559.1 tr|Q6IDC0|Q6IDC0_ARATH At3g45900 OS=Arabidopsis
thaliana GN=At3g45900 PE=2 SV=1,34.65,2e-17,coiled-coil,NULL; GB DEF:
EMB|CAB82814.1,NULL; RIBONUCLEASE P PROTEIN SUBUNIT
P38-RELATED,NULL,NODE_11030_length_2668_cov_66.770988.path2.1
         (414 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53020.1 | Symbols:  | Ribonuclease P protein subunit P38-rel...   261   5e-70
AT3G45900.1 | Symbols:  | Ribonuclease P protein subunit P38-rel...    97   2e-20

>AT5G53020.1 | Symbols:  | Ribonuclease P protein subunit
           P38-related | chr5:21499899-21502235 FORWARD LENGTH=720
          Length = 720

 Score =  261 bits (668), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 182/418 (43%), Positives = 249/418 (59%), Gaps = 36/418 (8%)

Query: 3   AEAERYATLIEQRHHLELDAFAEQMQLKDEKLEAFRWQLLRTELETKQLQSHLEGLVKDV 62
            E E    +I  +  +E+  F E M+LKDEK+E     L+ +ELE+K+L+S +EGL +++
Sbjct: 325 GEEELCIRVIGNKQEIEIGDFTEHMKLKDEKVETLCLHLMNSELESKRLRSCIEGLSQEM 384

Query: 63  KQLRHDKMKLESLMFEKEDELASLKEQ-VASKLRPLNCFRNNSNLLQQSSELAQDAVWSG 121
            QLRHD  +LE ++  + +E  SLK Q   ++ + L   +NN +  ++++          
Sbjct: 385 LQLRHDNTQLEGMVNRRGEESVSLKNQDFKTQPKSLVPHKNNMSCRRKNT---------- 434

Query: 122 VKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDL-LAQS-PENNVEEEKDVPR 179
            K   +   E+E    +       EK  +    DE  ++ L  AQS  E   E E+ +P 
Sbjct: 435 -KTEARGEQEREFDSRDVSQVNATEKGRESYSPDELRHLTLKAAQSDAEEGSENERLLPE 493

Query: 180 EDSPIPIQNLRPNQVQVVDAAEKIGSTTCTSF-NKTKQSPWKMDLHALGVSYKIKRLKQQ 238
            +                   EK  S    S  + T   PW+MDLHALGVSYKIKRLKQQ
Sbjct: 494 NECT---------------KREKANSKESKSLISSTSNPPWRMDLHALGVSYKIKRLKQQ 538

Query: 239 LVLVERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQG 298
           L+++ER  G   + E  + S D+  G +A L L TLLNKQV RYQSLQEK DDLCKRM  
Sbjct: 539 LMMLERYIGKPESQETEKNSSDT--GKRALLLLITLLNKQVTRYQSLQEKIDDLCKRMHV 596

Query: 299 NELYTNVGEMNGARAKEKTSTLEHFLEETFQLQRYIVATGQKLMEVQTKIVPGFVGVVVE 358
           N+     G+ N A  + KTS LEHFL+ETFQLQRYIVATGQKLME+Q+KI  GFV  +V+
Sbjct: 597 NDPQKISGK-NRANGEAKTS-LEHFLDETFQLQRYIVATGQKLMEIQSKIASGFVEFLVD 654

Query: 359 --EMDNKSAAAGIDMKRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 414
               ++ S+++  D +RFA++I++LF EVQRGLEVR +R IGDLEGTLAREGMI L+R
Sbjct: 655 LITTESSSSSSSFDPERFAENIKSLFQEVQRGLEVRISRCIGDLEGTLAREGMIHLKR 712


>AT3G45900.1 | Symbols:  | Ribonuclease P protein subunit
           P38-related | chr3:16874566-16875984 REVERSE LENGTH=389
          Length = 389

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 33/228 (14%)

Query: 182 SPIPIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRLKQQLVL 241
           SP    N  P Q    ++ E +       F   ++SPWK+D    GVS K++ L+++L+ 
Sbjct: 178 SPNAYGNFNPFQDLQYESLESV--YRMKHFVPRRESPWKIDSEGTGVSAKLRLLEEELLN 235

Query: 242 VERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQGNEL 301
           +E++            SD SK        + +LL KQ  RYQ+L  K DDLC+RMQ ++ 
Sbjct: 236 LEKVC---------RPSDISK--------VPSLLKKQAKRYQALSGKIDDLCRRMQSSD- 277

Query: 302 YTNVGEMNGARAKE-KTSTLEHFLEETFQLQRYIVATGQKLMEVQTKIVPGFVGVVVEEM 360
                  +     E +T     FL E F+LQ+    TGQKL+ +QT+I     G      
Sbjct: 278 -----PCDATLGPEFRTQRQNEFLLECFRLQQRASETGQKLVSLQTEITRSNQG------ 326

Query: 361 DNKSAAAGIDMKRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREG 408
            ++ + A ++  R  D I+N   EVQR LE+  ARIIGDLEG LAR+G
Sbjct: 327 -DQLSQAKMNTGRSLDLIKNNLKEVQRNLEIWLARIIGDLEGILARDG 373