Miyakogusa Predicted Gene
- Lj0g3v0343529.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343529.1 Non Chatacterized Hit- tr|I1M8Q7|I1M8Q7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38041 PE,38.14,3e-19,no
description,Copper amine oxidase, N2/N3-terminal; DUF3223,Protein of
unknown function DUF3223,CUFF.23565.1
(168 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuc... 169 1e-42
AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223) ... 112 8e-26
AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223) ... 109 7e-25
AT1G45230.2 | Symbols: | Protein of unknown function (DUF3223) ... 109 1e-24
AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr... 54 6e-08
AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nucl... 54 6e-08
AT5G62440.1 | Symbols: | Protein of unknown function (DUF3223) ... 46 1e-05
>AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear
RNA polymerase D1B | chr2:16715089-16723406 FORWARD
LENGTH=1976
Length = 1976
Score = 169 bits (427), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 14 RLDMYSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETK 73
RLD ++SEEQ++L D+EP+++++R+IM Y DGDP+ DD+ F+LE + HP+KETK
Sbjct: 1728 RLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETK 1787
Query: 74 MGAGIDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYF 133
+G+G+DF+ V +HT F DSRC +VV DG ++DFSYRK L++++ KKYP+ AE F+ KYF
Sbjct: 1788 LGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYF 1847
Query: 134 RKPRPRDQTPNQTQDQTSTPVGDQPQTP 161
KPRP QD +TP G++ P
Sbjct: 1848 TKPRPSGNRDRNNQD--ATPPGEEQSQP 1873
>AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223) |
chr3:17181138-17182346 REVERSE LENGTH=207
Length = 207
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 82/128 (64%)
Query: 9 RVPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHP 68
R P + + E +IL+DIEPI + I+ + Y DG+ L +D++ ++E + +HP
Sbjct: 78 RYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHP 137
Query: 69 EKETKMGAGIDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESF 128
+ K+G G+DF+MV RH F+ SRCL+VV DG DFSY+KCL +++R KYP AE F
Sbjct: 138 YSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERF 197
Query: 129 LGKYFRKP 136
+ ++F++
Sbjct: 198 IREHFKRA 205
>AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223) |
chr1:17169874-17171381 REVERSE LENGTH=219
Length = 219
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%)
Query: 16 DMYSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMG 75
D + E IL+ P+V +R I+ Y + D L + +R I+E + +HPE E K+G
Sbjct: 95 DEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIG 154
Query: 76 AGIDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFRK 135
GID++MV H +F+ SRC+++V KDG DFSY KC+ I+KKYP A+SF+ ++FRK
Sbjct: 155 CGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
Query: 136 PR 137
R
Sbjct: 215 RR 216
>AT1G45230.2 | Symbols: | Protein of unknown function (DUF3223) |
chr1:17169874-17171381 REVERSE LENGTH=219
Length = 219
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%)
Query: 16 DMYSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMG 75
D + E IL+ P+V +R I+ Y + D L + +R I+E + +HPE E K+G
Sbjct: 95 DEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIG 154
Query: 76 AGIDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFRK 135
GID++MV H +F+ SRC+++V KDG DFSY KC+ I+KKYP A+SF+ ++FRK
Sbjct: 155 CGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
Query: 136 PR 137
R
Sbjct: 215 RR 216
>AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A |
chr1:23355329-23361126 REVERSE LENGTH=1453
Length = 1453
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 27 KDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAGIDFVMVSRH 86
K+IE + QS++RI+ Y + L D+ + + V + HP K+G G+ + V++
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK- 1392
Query: 87 TNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFR 134
+ DS C VV DG EDFSY KC+ + P+ + KY +
Sbjct: 1393 SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLK 1440
>AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuclear
RNA polymerase D1A | chr1:23355329-23361126 REVERSE
LENGTH=1453
Length = 1453
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 27 KDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAGIDFVMVSRH 86
K+IE + QS++RI+ Y + L D+ + + V + HP K+G G+ + V++
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK- 1392
Query: 87 TNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFR 134
+ DS C VV DG EDFSY KC+ + P+ + KY +
Sbjct: 1393 SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLK 1440
>AT5G62440.1 | Symbols: | Protein of unknown function (DUF3223) |
chr5:25072620-25073917 REVERSE LENGTH=202
Length = 202
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 59 ILENVFEHHPEKETKMGAGIDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLD 114
+L+ + + H E E K+G GI V H ++ SRC ++V +D +DFS+RKC+D
Sbjct: 105 LLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWK-SRCFFLVREDDTADDFSFRKCVD 159