Miyakogusa Predicted Gene

Lj0g3v0343009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343009.1 tr|H3GSS2|H3GSS2_PHYRM tRNA pseudouridine
synthase OS=Phytophthora ramorum
GN=fgenesh1_pg.C_scaffold,34.04,0.000000000000002,PSEUDOURIDYLATE
SYNTHASE,Pseudouridine synthase I, TruA; no description,Pseudouridine
synthase I, Tr,CUFF.23514.1
         (507 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein ...   555   e-158
AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein ...   543   e-155
AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein ...   412   e-115
AT2G30320.1 | Symbols:  | Pseudouridine synthase family protein ...    84   3e-16
AT1G20290.1 | Symbols:  | SWI-SNF-related chromatin binding prot...    68   2e-11
AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein ...    61   2e-09
AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein ...    61   2e-09

>AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:7051846-7053588 REVERSE LENGTH=549
          Length = 549

 Score =  555 bits (1431), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/456 (59%), Positives = 338/456 (74%), Gaps = 22/456 (4%)

Query: 34  KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYDFARSAR 93
           +RRK+AI FA+CGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVPD DR  P+ Y++ARSAR
Sbjct: 56  RRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSAR 115

Query: 94  TDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCDRRRYVY 153
           TDKGVSAVGQVVSGRFY+DPPG V+RLN  LP QIR+FG+KRV  S+S+KKFCDRRRYVY
Sbjct: 116 TDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVY 175

Query: 154 LIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV-IGLVGNGKHNLELEGVDV 212
           LIPVFALDPC H + E V   LG E   VKC+ CSE+G K+ +G++G      + + +++
Sbjct: 176 LIPVFALDPCVHGEAEMVRTDLGYE--YVKCVECSEKGYKIPLGVMGKDTDCCDTKSLEI 233

Query: 213 GAGLSSNRNDTLTSGV-TEDAADPLSKGHNQLNEELSNDNEGKVSADDMKTKTDLEAVVS 271
            + +SS+  D + + V  E  +  +    N LN E+ +     VSA        L +   
Sbjct: 234 QSDISSSTCDAIGADVKCETLSSSVPSAENNLNSEVLDG--ADVSA--------LSSKAE 283

Query: 272 GQDEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVGTHNFH 331
           G +E   L+   +NN          GED     S+FCYGEKE+ERFN+IL YYVG+HNFH
Sbjct: 284 GMEESNTLAKVEMNNG--------EGEDMTKSESKFCYGEKEKERFNRILSYYVGSHNFH 335

Query: 332 NFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLAVAIMR 391
           NFTTR K  DPAA R+I+SF+ANT + ++G +FVKCEVVGQSFMLHQIRKM GLAVAIMR
Sbjct: 336 NFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKMIGLAVAIMR 395

Query: 392 DCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYEKEAED 451
           + APESLI+ + +KDV I VP APEVGLYLDECFFTSYN ++K +HEEVSM+ Y++ AE+
Sbjct: 396 NYAPESLIEASFKKDVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEEVSMEEYKEVAEE 455

Query: 452 FKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLR 487
           FK KY+YSHI S E+K+G V +WLHSLN RNYPDLR
Sbjct: 456 FKWKYVYSHIGSAEEKDGAVAIWLHSLNQRNYPDLR 491


>AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28558813-28560294 REVERSE LENGTH=463
          Length = 463

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/453 (59%), Positives = 329/453 (72%), Gaps = 39/453 (8%)

Query: 36  RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYDFARSARTD 95
           +K+AI FA+CGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP++ RG PK YDFARSARTD
Sbjct: 22  QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81

Query: 96  KGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCDRRRYVYLI 155
           KGVSAVGQVVSGRF +DP G V+RLN NLP QIRIFG+K VT S+S+KKFCDRRRYVYL+
Sbjct: 82  KGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141

Query: 156 PVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV-IGLVGNGK-HNLELEGVDVG 213
           PVFALDP  HRDRETV+ASLG   E VKC  CSERGRK+  GLVG  K  N   + +D  
Sbjct: 142 PVFALDPISHRDRETVMASLGPGEEYVKCFECSERGRKIPPGLVGKWKGTNFGTKSLDFQ 201

Query: 214 AGLSSNRNDTLTSGVTEDAADPLSKGHNQLNEELSNDNEGKVSADDMKTKTDLEAVVSGQ 273
           + +SSN +  L S +  +A      G   ++ E+     G++  D  K  T+        
Sbjct: 202 SDISSNNSSALRSDIKIEALSSNLAGLCSVDVEV-----GRIQEDSCKLNTN-------- 248

Query: 274 DEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVGTHNFHNF 333
                                     E    S+FCYGEKE+ERF++IL  YVG++NFHNF
Sbjct: 249 ------------------------SSETKVKSKFCYGEKEKERFSRILSCYVGSYNFHNF 284

Query: 334 TTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDC 393
           TTR K +DP A R IISF ANT + ++G++F+KCEV+G+SFMLHQIRKM GLAVAIMR+C
Sbjct: 285 TTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNC 344

Query: 394 APESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYEKEAEDFK 453
           A ESLI  A  KDV+I VP APEVGLYLDECFFTSYN  ++D+HEEVSM+AY++EAE FK
Sbjct: 345 ASESLIQSAFSKDVNITVPMAPEVGLYLDECFFTSYNRNFEDSHEEVSMEAYKEEAEAFK 404

Query: 454 MKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDL 486
           +K+IYSHI +TE+K G + LWLHSLN+RNYPDL
Sbjct: 405 LKHIYSHIGATERKYGNMALWLHSLNYRNYPDL 437


>AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28559224-28560294 REVERSE LENGTH=356
          Length = 356

 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/372 (56%), Positives = 257/372 (69%), Gaps = 39/372 (10%)

Query: 36  RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYDFARSARTD 95
           +K+AI FA+CGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP++ RG PK YDFARSARTD
Sbjct: 22  QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81

Query: 96  KGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCDRRRYVYLI 155
           KGVSAVGQVVSGRF +DP G V+RLN NLP QIRIFG+K VT S+S+KKFCDRRRYVYL+
Sbjct: 82  KGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141

Query: 156 PVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV-IGLVGNGK-HNLELEGVDVG 213
           PVFALDP  HRDRETV+ASLG   E VKC  CSERGRK+  GLVG  K  N   + +D  
Sbjct: 142 PVFALDPISHRDRETVMASLGPGEEYVKCFECSERGRKIPPGLVGKWKGTNFGTKSLDFQ 201

Query: 214 AGLSSNRNDTLTSGVTEDAADPLSKGHNQLNEELSNDNEGKVSADDMKTKTDLEAVVSGQ 273
           + +SSN +  L S +  +A      G   ++ E+     G++  D  K  T+        
Sbjct: 202 SDISSNNSSALRSDIKIEALSSNLAGLCSVDVEV-----GRIQEDSCKLNTN-------- 248

Query: 274 DEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVGTHNFHNF 333
                                     E    S+FCYGEKE+ERF++IL  YVG++NFHNF
Sbjct: 249 ------------------------SSETKVKSKFCYGEKEKERFSRILSCYVGSYNFHNF 284

Query: 334 TTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDC 393
           TTR K +DP A R IISF ANT + ++G++F+KCEV+G+SFMLHQIRKM GLAVAIMR+C
Sbjct: 285 TTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNC 344

Query: 394 APESLIDKALQK 405
           A ESLI  A  K
Sbjct: 345 ASESLIQSAFSK 356


>AT2G30320.1 | Symbols:  | Pseudouridine synthase family protein |
           chr2:12925728-12927896 REVERSE LENGTH=510
          Length = 510

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 12/139 (8%)

Query: 34  KRRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYDFAR 90
           +++K+ I   Y G  Y+G+Q    +P  KTIEG+LE A+Y +G + D++ G   +  +AR
Sbjct: 61  RKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWAR 120

Query: 91  SARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNLNLPPQIRIFGFKRVTASYS 141
           S+RTDKGV ++   +S +  I       DP G  L   ++ +LP  IR+F        + 
Sbjct: 121 SSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFD 180

Query: 142 AKKFCDRRRYVYLIPVFAL 160
            ++ C  R+Y YL+PV  L
Sbjct: 181 PRRECTLRKYSYLLPVDVL 199



 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 361 GMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLY 420
           G  FV+  + G+SFMLHQIRKM G AVA+ R+  P  +I  +L K   I++P AP   L 
Sbjct: 340 GFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLI 399

Query: 421 L 421
           L
Sbjct: 400 L 400


>AT1G20290.1 | Symbols:  | SWI-SNF-related chromatin binding protein
           | chr1:7025548-7029698 REVERSE LENGTH=382
          Length = 382

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 446 EKEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLR 487
           E+E + FK K++YSHI S E+K+G V +WLHSLN RNYPDLR
Sbjct: 93  EQEHDQFKWKHVYSHIGSAEEKDGAVAIWLHSLNQRNYPDLR 134


>AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=471
          Length = 471

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 32  RPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGY-------PK 84
           R +R    I  +Y G  + G QK P   T++G +E++L   G   D  +         P 
Sbjct: 89  RWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSL---GGFVDERKAQLLKKKCKPL 145

Query: 85  RYDFARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKRVTAS 139
                 + RTDKGVSA+ QV S  FY     I+P  + D +N +   ++R+    +V+ S
Sbjct: 146 EGRVLVAGRTDKGVSALNQVCS--FYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRS 203

Query: 140 YSAKKFCDRRRYVYLIPVFALDP 162
           +        RRY+Y+ P+   +P
Sbjct: 204 FHPNFSAKWRRYLYIFPLDDAEP 226


>AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=420
          Length = 420

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 28  GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGY----- 82
           G   R +R    I  +Y G  + G QK P   T++G +E++L   G   D  +       
Sbjct: 85  GRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSL---GGFVDERKAQLLKKK 141

Query: 83  --PKRYDFARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKR 135
             P       + RTDKGVSA+ QV S  FY     I+P  + D +N +   ++R+    +
Sbjct: 142 CKPLEGRVLVAGRTDKGVSALNQVCS--FYTWRKDIEPIAIEDAINKDASGKLRVVSISK 199

Query: 136 VTASYSAKKFCDRRRYVYLIPVFALDP 162
           V+ S+        RRY+Y+ P+   +P
Sbjct: 200 VSRSFHPNFSAKWRRYLYIFPLDDAEP 226