Miyakogusa Predicted Gene

Lj0g3v0342609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342609.1 Non Chatacterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.27,0,DNA
DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN
1)(UV-DAMAGED DNA-BINDING FACTOR),,CUFF.23486.1
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A | ...   321   2e-88
AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B | ...   303   2e-83
AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A | ...   264   2e-71

>AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A |
           chr4:2746288-2752663 FORWARD LENGTH=1088
          Length = 1088

 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 146/157 (92%), Positives = 155/157 (98%)

Query: 1   MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQGLQPMLDVPIYG 60
           MS WNYVVTAHKPT+VTHSCVGNFT PQ+LNLIVAKCTRIEIHLL+PQGLQPMLDVPIYG
Sbjct: 1   MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 61  RIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI 120
           RIATLELFRPHGEAQD+LF+AT+RYKFCVLQWDPE+SEL+TRAMGDVSDRIGRPTDNGQI
Sbjct: 61  RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120

Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFSIR 157
           GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAF+IR
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIR 157


>AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B |
           chr4:11258916-11265309 REVERSE LENGTH=1088
          Length = 1088

 Score =  303 bits (777), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 139/157 (88%), Positives = 150/157 (95%)

Query: 1   MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQGLQPMLDVPIYG 60
           MS+WNY VTA KPT VTHSCVGNFT PQ+LNLIVAK TRIEIHLLSPQGLQ +LDVP+YG
Sbjct: 1   MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60

Query: 61  RIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI 120
           RIAT+ELFRPHGEAQD+LFVAT+RYKFCVLQWD E+SEL+TRAMGDVSDRIGRPTDNGQI
Sbjct: 61  RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120

Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFSIR 157
           GIIDPDCR+IGLHLYDGLFKVIPFDNKGQLKEAF+IR
Sbjct: 121 GIIDPDCRVIGLHLYDGLFKVIPFDNKGQLKEAFNIR 157


>AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A |
           chr4:2746288-2752663 FORWARD LENGTH=1067
          Length = 1067

 Score =  264 bits (674), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 134/157 (85%), Gaps = 21/157 (13%)

Query: 1   MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQGLQPMLDVPIYG 60
           MS WNYVVTAHKPT+VTHSCVGNFT PQ+LNLIVAKCTRIEIHLL+PQGLQPMLDVPIYG
Sbjct: 1   MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 61  RIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI 120
           RIATLELFRPHGEAQD+LF+AT+RYKFCVLQWDPE+SEL+TRAMGDVSDRIGRPTDNGQ 
Sbjct: 61  RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQ- 119

Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFSIR 157
                               VIPFDNKGQLKEAF+IR
Sbjct: 120 --------------------VIPFDNKGQLKEAFNIR 136