Miyakogusa Predicted Gene

Lj0g3v0342359.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342359.2 tr|F2E9B9|F2E9B9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,54.74,4e-19,coiled-coil,NULL; seg,NULL,CUFF.23459.2
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    80   3e-16
AT1G80700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    80   3e-16

>AT1G80980.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G80700.1); Has 477 Blast hits to 341
           proteins in 85 species: Archae - 2; Bacteria - 44;
           Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0;
           Other Eukaryotes - 274 (source: NCBI BLink). |
           chr1:30422184-30423440 REVERSE LENGTH=214
          Length = 214

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 40/47 (85%)

Query: 2   MTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDM 48
           +TA K+LFTEPP+K KFGFD+H+VQF   C+PS+AVYLVAQYAR  M
Sbjct: 64  VTAAKILFTEPPKKNKFGFDWHVVQFIIVCLPSVAVYLVAQYARRKM 110


>AT1G80700.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G80980.1); Has 476 Blast hits to 340
           proteins in 85 species: Archae - 2; Bacteria - 44;
           Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0;
           Other Eukaryotes - 270 (source: NCBI BLink). |
           chr1:30331978-30333233 FORWARD LENGTH=214
          Length = 214

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 40/47 (85%)

Query: 2   MTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDM 48
           +TA K+LFTEPP+K KFGFD+H+VQF   C+PS+AVYLVAQYAR  M
Sbjct: 64  VTAAKILFTEPPKKNKFGFDWHVVQFIIVCLPSVAVYLVAQYARRKM 110