Miyakogusa Predicted Gene
- Lj0g3v0342229.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0342229.1 tr|G7JJ22|G7JJ22_MEDTR Helicase swr1 OS=Medicago
truncatula GN=MTR_4g118720 PE=4 SV=1,61.66,0,coiled-coil,NULL;
HSA,Helicase/SANT-associated, DNA binding; seg,NULL; no
description,Glutamine-Leuc,CUFF.23470.1
(882 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 322 1e-87
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 322 1e-87
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 322 1e-87
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/244 (63%), Positives = 186/244 (76%)
Query: 605 PPPKYTMSERWIMDQQRNRLLVEQNWVHKQQKTKQRMVTSFLKLKENVNSSEDISNKTKS 664
P PKYTMS++WIM +Q RLLV+++W KQQK Q + + F +LKE+V+ S+DIS KTKS
Sbjct: 459 PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESVSLSDDISAKTKS 518
Query: 665 VIEXXXXXXXXXXXXXXSDFLNDFFKPITTEMEHLKSIKKHRHGRRVKQLEKIEHKMKDX 724
VIE S+F+ +FFKPI T++EHLKS KKH+HGRR+KQLEK E KMK+
Sbjct: 519 VIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEE 578
Query: 725 XXXXXXXXXXXFFSEIEVHKERLDDVFKMKRERWKGLNRYVKEFHKRKERIHREKIDRIQ 784
FF +EVHKE+L+D+FK++RER KG NRY KEFHKRKER+HREKID+IQ
Sbjct: 579 RQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQ 638
Query: 785 REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLREAKAAAGPFEYDVD 844
REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKL+EAK FE + D
Sbjct: 639 REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEAKLLTSRFENEAD 698
Query: 845 EARS 848
E R+
Sbjct: 699 ETRT 702
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 214/545 (39%), Positives = 277/545 (50%), Gaps = 118/545 (21%)
Query: 3 SSQNVEMEAAKFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKEHTMPYQVISRAMETVI 62
SS N+E+EAAKFLHKLIQDSKDEPAKLATKL+VILQHMK+SGKE+TMPYQVISRAM+TV+
Sbjct: 4 SSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVV 63
Query: 63 NQHSLDIEALKSSRLPL--------SGSAQI-GSSQAVGVAKDSRAGLAENEMPKMVA-- 111
NQH LDIEALKSS LP SGSA + GSSQAVGV+ + +A L ENEM K A
Sbjct: 64 NQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFT 123
Query: 112 SGRPPVAPSSGATDFYQGSVTQRSGQSFDPESPSSLDSRSAHSQSQDQHDAAKLDKQVKQ 171
SGR +S + FYQGS TQ S +SFD ESPS+LDS S SQ ++ + + Q
Sbjct: 124 SGRQLGGSNSASQTFYQGSGTQ-SNRSFDRESPSNLDSTSGISQPHNRSET------MNQ 176
Query: 172 KDGKKATSKRKRGDTSSPVEPHTDVPSQLDSQNTVNTRKGKMMTESSDGLPVKSGDLTKF 231
+D K++ KRKRG++S + + D DS + ++G+++K
Sbjct: 177 RD-VKSSGKRKRGESSLSWDQNMDNSQIFDSHKIDD----------------QTGEVSKI 219
Query: 232 NMVPSSIQMEHFPALSGSMQTMHSANQEGAYAKVHGGLVVATTSQPMSEPVFSSSVQYGS 291
M P SG ++ +H V +S + P
Sbjct: 220 EM----------PGNSGDIRNLH----------------VGLSSDAFTTP---------- 243
Query: 292 VLENDGGSSTSLTDRHKIAQIGRQGSFSETTALRQGFPPKDTGKSAVSAVPESSSTPFKE 351
Q G Q SE TA+R K+ G + S +PF+E
Sbjct: 244 -------------------QCGWQS--SEATAIRPAI-HKEPGNNVAGEGFLPSGSPFRE 281
Query: 352 QQLKQLRAQCLVFLAFRNNLAPKKLHLEIALGTSFSREG---KDPIDHKXXXXXXXXXXX 408
QQLKQLRAQCLVFLA RN L PKKLH+EIAL +F E + D K
Sbjct: 282 QQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPKGRTHTSSD--- 338
Query: 409 XXXVMMPFGCLNNMRQSDSNPSGPSSTGKTVEADSYSKGTESPRVMED---NGILSEERK 465
G + ++ S P TG+ E D SK TE R+ E N + S+ +K
Sbjct: 339 -------LGGIPDVSALLSRTDNP--TGRLDEMDFSSKETERSRLGEKSFANTVFSDGQK 389
Query: 466 HLLAAKKGEFEKQIQEKVAAQASLTTSFQQDSSSLNKQTNPEISGWTGFASPNEAAKGSP 525
LLA++ + Q Q V + + LT S L K T E+ GWTG N+ + +
Sbjct: 390 -LLASRIPSSQAQTQVAV-SHSQLTF-----SPGLTKNTPSEMVGWTGVIKTNDLSTSAV 442
Query: 526 QPSQF 530
Q +F
Sbjct: 443 QLDEF 447
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/244 (63%), Positives = 186/244 (76%)
Query: 605 PPPKYTMSERWIMDQQRNRLLVEQNWVHKQQKTKQRMVTSFLKLKENVNSSEDISNKTKS 664
P PKYTMS++WIM +Q RLLV+++W KQQK Q + + F +LKE+V+ S+DIS KTKS
Sbjct: 459 PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESVSLSDDISAKTKS 518
Query: 665 VIEXXXXXXXXXXXXXXSDFLNDFFKPITTEMEHLKSIKKHRHGRRVKQLEKIEHKMKDX 724
VIE S+F+ +FFKPI T++EHLKS KKH+HGRR+KQLEK E KMK+
Sbjct: 519 VIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEE 578
Query: 725 XXXXXXXXXXXFFSEIEVHKERLDDVFKMKRERWKGLNRYVKEFHKRKERIHREKIDRIQ 784
FF +EVHKE+L+D+FK++RER KG NRY KEFHKRKER+HREKID+IQ
Sbjct: 579 RQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQ 638
Query: 785 REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLREAKAAAGPFEYDVD 844
REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKL+EAK FE + D
Sbjct: 639 REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEAKLLTSRFENEAD 698
Query: 845 EARS 848
E R+
Sbjct: 699 ETRT 702
Score = 262 bits (669), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 214/545 (39%), Positives = 277/545 (50%), Gaps = 118/545 (21%)
Query: 3 SSQNVEMEAAKFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKEHTMPYQVISRAMETVI 62
SS N+E+EAAKFLHKLIQDSKDEPAKLATKL+VILQHMK+SGKE+TMPYQVISRAM+TV+
Sbjct: 4 SSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVV 63
Query: 63 NQHSLDIEALKSSRLPL--------SGSAQI-GSSQAVGVAKDSRAGLAENEMPKMVA-- 111
NQH LDIEALKSS LP SGSA + GSSQAVGV+ + +A L ENEM K A
Sbjct: 64 NQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFT 123
Query: 112 SGRPPVAPSSGATDFYQGSVTQRSGQSFDPESPSSLDSRSAHSQSQDQHDAAKLDKQVKQ 171
SGR +S + FYQGS TQ S +SFD ESPS+LDS S SQ ++ + + Q
Sbjct: 124 SGRQLGGSNSASQTFYQGSGTQ-SNRSFDRESPSNLDSTSGISQPHNRSET------MNQ 176
Query: 172 KDGKKATSKRKRGDTSSPVEPHTDVPSQLDSQNTVNTRKGKMMTESSDGLPVKSGDLTKF 231
+D K++ KRKRG++S + + D DS + ++G+++K
Sbjct: 177 RD-VKSSGKRKRGESSLSWDQNMDNSQIFDSHKIDD----------------QTGEVSKI 219
Query: 232 NMVPSSIQMEHFPALSGSMQTMHSANQEGAYAKVHGGLVVATTSQPMSEPVFSSSVQYGS 291
M P SG ++ +H V +S + P
Sbjct: 220 EM----------PGNSGDIRNLH----------------VGLSSDAFTTP---------- 243
Query: 292 VLENDGGSSTSLTDRHKIAQIGRQGSFSETTALRQGFPPKDTGKSAVSAVPESSSTPFKE 351
Q G Q SE TA+R K+ G + S +PF+E
Sbjct: 244 -------------------QCGWQS--SEATAIRPAI-HKEPGNNVAGEGFLPSGSPFRE 281
Query: 352 QQLKQLRAQCLVFLAFRNNLAPKKLHLEIALGTSFSREG---KDPIDHKXXXXXXXXXXX 408
QQLKQLRAQCLVFLA RN L PKKLH+EIAL +F E + D K
Sbjct: 282 QQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPKGRTHTSSD--- 338
Query: 409 XXXVMMPFGCLNNMRQSDSNPSGPSSTGKTVEADSYSKGTESPRVMED---NGILSEERK 465
G + ++ S P TG+ E D SK TE R+ E N + S+ +K
Sbjct: 339 -------LGGIPDVSALLSRTDNP--TGRLDEMDFSSKETERSRLGEKSFANTVFSDGQK 389
Query: 466 HLLAAKKGEFEKQIQEKVAAQASLTTSFQQDSSSLNKQTNPEISGWTGFASPNEAAKGSP 525
LLA++ + Q Q V + + LT S L K T E+ GWTG N+ + +
Sbjct: 390 -LLASRIPSSQAQTQVAV-SHSQLTF-----SPGLTKNTPSEMVGWTGVIKTNDLSTSAV 442
Query: 526 QPSQF 530
Q +F
Sbjct: 443 QLDEF 447
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/244 (63%), Positives = 186/244 (76%)
Query: 605 PPPKYTMSERWIMDQQRNRLLVEQNWVHKQQKTKQRMVTSFLKLKENVNSSEDISNKTKS 664
P PKYTMS++WIM +Q RLLV+++W KQQK Q + + F +LKE+V+ S+DIS KTKS
Sbjct: 459 PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESVSLSDDISAKTKS 518
Query: 665 VIEXXXXXXXXXXXXXXSDFLNDFFKPITTEMEHLKSIKKHRHGRRVKQLEKIEHKMKDX 724
VIE S+F+ +FFKPI T++EHLKS KKH+HGRR+KQLEK E KMK+
Sbjct: 519 VIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEE 578
Query: 725 XXXXXXXXXXXFFSEIEVHKERLDDVFKMKRERWKGLNRYVKEFHKRKERIHREKIDRIQ 784
FF +EVHKE+L+D+FK++RER KG NRY KEFHKRKER+HREKID+IQ
Sbjct: 579 RQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQ 638
Query: 785 REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLREAKAAAGPFEYDVD 844
REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKL+EAK FE + D
Sbjct: 639 REKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEAKLLTSRFENEAD 698
Query: 845 EARS 848
E R+
Sbjct: 699 ETRT 702
Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 214/545 (39%), Positives = 277/545 (50%), Gaps = 118/545 (21%)
Query: 3 SSQNVEMEAAKFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKEHTMPYQVISRAMETVI 62
SS N+E+EAAKFLHKLIQDSKDEPAKLATKL+VILQHMK+SGKE+TMPYQVISRAM+TV+
Sbjct: 4 SSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVV 63
Query: 63 NQHSLDIEALKSSRLPL--------SGSAQI-GSSQAVGVAKDSRAGLAENEMPKMVA-- 111
NQH LDIEALKSS LP SGSA + GSSQAVGV+ + +A L ENEM K A
Sbjct: 64 NQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFT 123
Query: 112 SGRPPVAPSSGATDFYQGSVTQRSGQSFDPESPSSLDSRSAHSQSQDQHDAAKLDKQVKQ 171
SGR +S + FYQGS TQ S +SFD ESPS+LDS S SQ ++ + + Q
Sbjct: 124 SGRQLGGSNSASQTFYQGSGTQ-SNRSFDRESPSNLDSTSGISQPHNRSET------MNQ 176
Query: 172 KDGKKATSKRKRGDTSSPVEPHTDVPSQLDSQNTVNTRKGKMMTESSDGLPVKSGDLTKF 231
+D K++ KRKRG++S + + D DS + ++G+++K
Sbjct: 177 RD-VKSSGKRKRGESSLSWDQNMDNSQIFDSHKIDD----------------QTGEVSKI 219
Query: 232 NMVPSSIQMEHFPALSGSMQTMHSANQEGAYAKVHGGLVVATTSQPMSEPVFSSSVQYGS 291
M P SG ++ +H V +S + P
Sbjct: 220 EM----------PGNSGDIRNLH----------------VGLSSDAFTTP---------- 243
Query: 292 VLENDGGSSTSLTDRHKIAQIGRQGSFSETTALRQGFPPKDTGKSAVSAVPESSSTPFKE 351
Q G Q SE TA+R K+ G + S +PF+E
Sbjct: 244 -------------------QCGWQS--SEATAIRPAI-HKEPGNNVAGEGFLPSGSPFRE 281
Query: 352 QQLKQLRAQCLVFLAFRNNLAPKKLHLEIALGTSFSREG---KDPIDHKXXXXXXXXXXX 408
QQLKQLRAQCLVFLA RN L PKKLH+EIAL +F E + D K
Sbjct: 282 QQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPKGRTHTSSD--- 338
Query: 409 XXXVMMPFGCLNNMRQSDSNPSGPSSTGKTVEADSYSKGTESPRVMED---NGILSEERK 465
G + ++ S P TG+ E D SK TE R+ E N + S+ +K
Sbjct: 339 -------LGGIPDVSALLSRTDNP--TGRLDEMDFSSKETERSRLGEKSFANTVFSDGQK 389
Query: 466 HLLAAKKGEFEKQIQEKVAAQASLTTSFQQDSSSLNKQTNPEISGWTGFASPNEAAKGSP 525
LLA++ + Q Q V + + LT S L K T E+ GWTG N+ + +
Sbjct: 390 -LLASRIPSSQAQTQVAV-SHSQLTF-----SPGLTKNTPSEMVGWTGVIKTNDLSTSAV 442
Query: 526 QPSQF 530
Q +F
Sbjct: 443 QLDEF 447