Miyakogusa Predicted Gene

Lj0g3v0341639.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341639.1 CUFF.23404.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60750.1 | Symbols:  | CAAX amino terminal protease family pr...   233   1e-61

>AT5G60750.1 | Symbols:  | CAAX amino terminal protease family
           protein | chr5:24431072-24433199 FORWARD LENGTH=347
          Length = 347

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 128/177 (72%), Gaps = 5/177 (2%)

Query: 43  NSPKNKLSILCFRHEHHSPETPKPEVIDQYLCEESVQSESNDSSVTKRDQNLILQKVASE 102
            S K+K  ILCFR+E  +PE P     + ++ EE V+ + +     K D     QK A  
Sbjct: 50  KSAKHKWKILCFRNEDSAPENP-----EHFVPEELVKPDQDSPCTDKTDWKATFQKAADA 104

Query: 103 VFKVFGNRWVVPWTAVTILQVMLLWTSAFWFIGSWMIPFAAHITGFSKDSLTFRGQALFS 162
           V K  G RW VPWT  TI+QVMLLW +AFWFIGSWMIPF AHI+GF K+SLTFRGQALFS
Sbjct: 105 VLKAIGTRWKVPWTVETIVQVMLLWVAAFWFIGSWMIPFMAHISGFHKESLTFRGQALFS 164

Query: 163 LITDVTEGLAGIAILHHCLSRFRPLPPDWFKFSLKGTWQPDVIIGCLMFPLVNRLSQ 219
           LITDVTEGLAGIAILH CLS FRPL  DWF+F+LKG WQ DVIIGC MFP VNRLSQ
Sbjct: 165 LITDVTEGLAGIAILHRCLSMFRPLASDWFRFTLKGNWQLDVIIGCFMFPFVNRLSQ 221