Miyakogusa Predicted Gene

Lj0g3v0341589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341589.1 Non Chatacterized Hit- tr|I3S696|I3S696_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.79,0,rplM_bact: ribosomal protein L13,Ribosomal protein L13,
bacterial-type; 50S RIBOSOMAL PROTEIN L13,NU,CUFF.23405.1
         (248 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family pr...   310   7e-85
AT3G01790.2 | Symbols:  | Ribosomal protein L13 family protein |...    88   5e-18
AT3G01790.1 | Symbols:  | Ribosomal protein L13 family protein |...    88   5e-18

>AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family
           protein | chr1:29575997-29577406 FORWARD LENGTH=241
          Length = 241

 Score =  310 bits (793), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 176/227 (77%), Gaps = 14/227 (6%)

Query: 26  KSSFVGFQLPLPKLSSSSIRTHFTAT----LRVHCQQETSLVTEEQSPVVAVEQDPRFMC 81
           KS F+GF L    +S  S+R    A     L+V C+ E +  T        V  + R+M 
Sbjct: 25  KSPFLGFSLT--AISKPSVRVGIYANSKRGLQVKCEAEPTTTTS------LVPANQRWMF 76

Query: 82  VEPEPRFKGPDIWNKTYYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLMTY 141
            E E    GPDIWN T+YPKA+DHVNT+K W+VVDATDK+LGRLASTIA HIRGKNL +Y
Sbjct: 77  DEEEA--NGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASY 134

Query: 142 TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFSQLQNRIPERIIEHA 201
           TPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGM VETF QLQ RIPERI+EHA
Sbjct: 135 TPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHA 194

Query: 202 VRGMLPKGRLGRDLFTHLKVYKGPDHPHAAQKPVDLPIRDKRIELKR 248
           VRGMLPKGRLGR LF HLKVYKGPDHPH AQKP+DLPIRDKRI+L++
Sbjct: 195 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241


>AT3G01790.2 | Symbols:  | Ribosomal protein L13 family protein |
           chr3:283880-285583 REVERSE LENGTH=205
          Length = 205

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 112 WYVVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           W V DA  +VLGRLAS I+  ++ K+  TY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTHLKVYKGPDHPHAA 231
           R H+G  G +K  +      + P  +I  AV  MLP   L  D    L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 150

Query: 232 QKPVD 236
            KP++
Sbjct: 151 DKPLE 155


>AT3G01790.1 | Symbols:  | Ribosomal protein L13 family protein |
           chr3:283880-285583 REVERSE LENGTH=205
          Length = 205

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 112 WYVVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           W V DA  +VLGRLAS I+  ++ K+  TY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTHLKVYKGPDHPHAA 231
           R H+G  G +K  +      + P  +I  AV  MLP   L  D    L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 150

Query: 232 QKPVD 236
            KP++
Sbjct: 151 DKPLE 155