Miyakogusa Predicted Gene

Lj0g3v0341359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341359.2 tr|B9HCJ4|B9HCJ4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_762468 PE=4
SV=1,61.15,0,WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; WD40 repeat-like,WD40-repe,CUFF.23377.2
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09080.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   196   2e-50
AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    51   2e-06
AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    49   8e-06

>AT3G09080.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:2776259-2781785 REVERSE LENGTH=1026
          Length = 1026

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/267 (43%), Positives = 157/267 (58%), Gaps = 28/267 (10%)

Query: 200 TLEIHEKLTNLSIHKEGSFTAIAFSPESSISNDNCKRAGDCFHIYALTDSG-----ILCL 254
           +L  H   T+    K  SF ++  S     S+ + ++  +   IYALT++G     I  +
Sbjct: 97  SLAFHGNQTDDGFQKGNSFVSV-ISANRVNSSGSDEQIDEVISIYALTEAGPQTSVIFHV 155

Query: 255 IRSGLTIQK-----------------SVALKVQKAFALSTSGKLIACACNNGEVQLFTPI 297
               + IQ                  ++  +VQK FALS S +LIACAC+ G VQLFTP 
Sbjct: 156 SLGNIQIQSFPSRAYFSSNKSFFEWLAMKCQVQKCFALSASSRLIACACSKGMVQLFTPE 215

Query: 298 SLEYVGSILYSKAQKLYEENNSVYHALVLEQDFQQSPAL-PDAVACKFSATEKLVVIYRD 356
           +L+Y G+I +S A+    EN S        ++ + SP + PDAVAC+FS T+KLVVIY +
Sbjct: 216 TLDYAGTIQFSDAKSSNTENLSQSPE---PKNIESSPGIFPDAVACQFSTTDKLVVIYGN 272

Query: 357 HSLCIWDIHDVNQVTKCFMLVSHSSCIWDVKNLCCENMHDLSSVCTARGCSGGVSFATCS 416
            SL +WD+ DVN+ T+C M++SHS+ IWD+KNL C NMH  ++ C ARGCS GVSF TCS
Sbjct: 273 RSLYVWDVDDVNKPTRCSMMISHSAGIWDIKNLSCGNMHSPTAACVARGCSEGVSFTTCS 332

Query: 417 ADGTIRLWDIATQ-SELSKNAEELKSE 442
            DGTIRLWD+A Q + L  NA    SE
Sbjct: 333 EDGTIRLWDLAFQVNPLEANASSNPSE 359



 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 74/96 (77%), Gaps = 1/96 (1%)

Query: 1  MKPTRRFNKPNTEESKLVLEEVIGLTTKNGNGLASNPSSSKCAYLAGSVVVIYDVSLGIQ 60
          MK +++  KP++  +KL+L+E+IGLTTKN NGLAS   SSKC YLAG VVV+YDV    Q
Sbjct: 1  MKLSQKLKKPSSS-TKLILQEIIGLTTKNANGLASVTCSSKCVYLAGCVVVVYDVDSCTQ 59

Query: 61 SHLMVSNRPPKPLSCVAMSREGRFIAAGEAGSQSSV 96
          SHL+VS+R PKPLSCVA+S+ GRF+AAGE    S V
Sbjct: 60 SHLVVSHRMPKPLSCVAISQNGRFVAAGERTRSSKV 95


>AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:3733406-3739363 FORWARD LENGTH=1021
          Length = 1021

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 74  SCVAMSREGRFIAAGEAGSQSSVLVWDSSTLSNVSELKGHPYRVACICFSPNGKHLVSVG 133
           S V     G F+A+G   S +++ VWD+     +   KGH   ++ I FSP+G+ +VS G
Sbjct: 104 SAVEFHPFGEFLASG--SSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGG 161

Query: 134 --GYIYLWDWRSGKLVTKLQATSSCSTISSVGFSSDAKFIVTVG--KKHLKFWTL 184
               + +WD  +GKL+ + +       I S+ F    +F++  G   + +KFW L
Sbjct: 162 LDNVVKVWDLTAGKLLHEFKCHE--GPIRSLDFHP-LEFLLATGSADRTVKFWDL 213


>AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18413690-18415223 FORWARD LENGTH=317
          Length = 317

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 73  LSCVAMSREGRFIAAGEAGSQSSVLVWDSSTLSNVSELKGHPYRVACICFSPNGKHLVSV 132
           +S VA S + RFI +  A    ++ +WD  T S +  L GH     C+ F+P    +VS 
Sbjct: 74  ISDVAFSSDARFIVS--ASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVS- 130

Query: 133 GGY---IYLWDWRSGKLVTKLQATSSCSTISSVGFSSDAKFIVTVGKKHL-KFWTLGS 186
           G +   + +WD  +GK +  L A S    +++V F+ D   IV+     L + W  G+
Sbjct: 131 GSFDETVRIWDVTTGKCLKVLPAHS--DPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186