Miyakogusa Predicted Gene
- Lj0g3v0340909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0340909.1 Non Chatacterized Hit- tr|D7T193|D7T193_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.61,2e-16,coiled-coil,NULL; seg,NULL,CUFF.23364.1
(279 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487... 156 1e-38
AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein w... 134 5e-32
AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:517... 132 3e-31
AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:233... 87 1e-17
AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:858... 79 3e-15
AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:105... 74 9e-14
AT1G73870.1 | Symbols: | B-box type zinc finger protein with CC... 52 5e-07
>AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 |
chr3:487438-488624 REVERSE LENGTH=347
Length = 347
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 130/253 (51%), Gaps = 43/253 (16%)
Query: 35 SWLLLNPVKXXXXXXXXXXXEHNQQGNGFLFSGEVDEYLDLVDCNSCGENQFXXXXXXXX 94
SWLL NP K Q NGFLF E YLDLVD +S +NQF
Sbjct: 130 SWLLPNPGKNI-----------GNQNNGFLFGVE---YLDLVDYSSSMDNQFEDNQ---- 171
Query: 95 XXXXXXXXXXXXXXXXYGVPQKGYAGDSVVPVXXXXXXX-----AHHFQLGLEFEPSKAG 149
Y Q+ + GD VVP+ +FQLG+ + S +G
Sbjct: 172 ----------------YTHYQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFS-SG 214
Query: 150 FSYNGXXXX---XXXXXXXMDVGVVPDSTMRDVSVSYSRPSKGTIDLFSGPALQMSSHFS 206
YN MD+ VVP+ST D++V + R +K TID SGP Q+ +
Sbjct: 215 AHYNNNSLKDLNHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLT 274
Query: 207 PLDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTT 266
P++REARVLRY IRYASRKAYAE RPRIKGRFAKR + EAE +++FST+
Sbjct: 275 PMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTS 334
Query: 267 LITEVGYGIVPSF 279
L++E GYGIVPSF
Sbjct: 335 LMSETGYGIVPSF 347
>AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein with
CCT domain | chr5:5171343-5172697 REVERSE LENGTH=373
Length = 373
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 114/225 (50%), Gaps = 27/225 (12%)
Query: 62 GFLFSGEVDEYLDLVDCNSCGENQFXXXXXXXXXXXXXXXXXXXXXXXXYGVPQKGYAGD 121
G LFS DEYL+LVD NS + +F VPQ Y GD
Sbjct: 169 GLLFS---DEYLNLVDYNSSMDYKFTGEYSQHQQNC--------------SVPQTSYGGD 211
Query: 122 SVVPVXXXXX-----XXAHHFQLGLEFEPSKAGFSYNGXXXXXXXXXXXMDVGVVPDSTM 176
VVP+ +FQ +++ S ++ NG M+ GVVP+ST
Sbjct: 212 RVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISS-METGVVPESTA 270
Query: 177 RDVSVSYSRPSKGTIDLFSGPALQM--SSHFSPLDREARVLRYXXXXXXXXXXXXIRYAS 234
+ S+ R KGT++ PA QM + SP+DREARVLRY IRYAS
Sbjct: 271 CVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYAS 330
Query: 235 RKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 279
RKAYAE RPR+ GRFAKR ++EAE +Q F+T L+ GYGIVPSF
Sbjct: 331 RKAYAEIRPRVNGRFAKR-EIEAE-EQGFNTMLMYNTGYGIVPSF 373
>AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 |
chr5:5176297-5177473 REVERSE LENGTH=355
Length = 355
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 70 DEYLDLVDCNSCGENQFXXXXXXXXXXXXXXXXXXXXXXXXYGVPQKGYAGDSVVP---- 125
DE+L+LVD +S + QF VPQ+ Y D VVP
Sbjct: 161 DEFLNLVDYSS-SDKQFTDQSNQYQLDC--------------NVPQRSYGEDGVVPLQIE 205
Query: 126 VXXXXXXXAHHFQLGLEFEPSKAGFSYNGXXXXXXXXXXXMDVGVVPDSTMRDVSVSYSR 185
V +FQL + A S NG MD+GVVP+ST D +VS R
Sbjct: 206 VSKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSS-MDLGVVPESTTSDATVSNPR 264
Query: 186 PSKGTIDLFSGPALQMSSHFSPLDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRI 245
K D P QM SP DREARVLRY IRYASRKAYAE RPRI
Sbjct: 265 SPKAVTDQPPYPPAQM---LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRI 321
Query: 246 KGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 279
KGRFAK+ DV+ E +Q FST + + GYGIVPSF
Sbjct: 322 KGRFAKKKDVDEEANQAFSTMITFDTGYGIVPSF 355
>AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 |
chr5:23355573-23356729 FORWARD LENGTH=355
Length = 355
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 115 QKGYAGDSVVPVXXXX-----XXXAHHFQLGLEFEPSK-AGFSYNGXXXXXXXXXXXMDV 168
Q GDS+VPV H F + +F SK + F+Y ++
Sbjct: 195 QNNAGGDSLVPVQTKTEPLPLTNNDHCFDI--DFCRSKLSAFTYPSQSVSHSVSTSSIEY 252
Query: 169 GVVPDSTMRDVSVSYSRPSKGTIDLFSGPALQMSSHFSPLDREARVLRYXXXXXXXXXXX 228
GVVPD + SV+ S + T +G Q SS +DREARVLRY
Sbjct: 253 GVVPDGNTNN-SVNRSTITSST----TGGDHQASS----MDREARVLRYREKRKNRKFEK 303
Query: 229 XIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVG---YGIVPSF 279
IRYASRKAYAE+RPRIKGRFAKRT E E D +F + + YG+VP+F
Sbjct: 304 TIRYASRKAYAESRPRIKGRFAKRT--ETENDDIFLSHVYASAAHAQYGVVPTF 355
>AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 |
chr5:8589325-8590949 FORWARD LENGTH=406
Length = 406
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 115 QKGYAGDSVVPVXXXXXX--XAHHFQLGLEFEPSKAGFSYNG--XXXXXXXXXXXMDVGV 170
Q D VVPV + ++F GF+Y G M+VGV
Sbjct: 243 QNSSGTDGVVPVENRTVRIPTVNENCFEMDFTGGSKGFTYGGGYNCISHSVSSSSMEVGV 302
Query: 171 VPDS-TMRDVSVSYSRPSKGTIDLFSGPALQMSSHFSPLDREARVLRYXXXXXXXXXXXX 229
VPD ++ DVS Y P+ D P Q + + +REARV+RY
Sbjct: 303 VPDGGSVADVSYPYGGPATSGAD----PGTQRAVPLTSAEREARVMRYREKRKNRKFEKT 358
Query: 230 IRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 279
IRYASRKAYAE RPRIKGRFAKRTD D + + + G+G+VP+F
Sbjct: 359 IRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIFS--GFGLVPTF 406
>AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 |
chr2:10566959-10567946 FORWARD LENGTH=294
Length = 294
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 120 GDSVVPVXXXXXXXAHHFQLGLEFEP-SKAGFSYNGXXXXXXXXXXXMDVGVVPDSTMRD 178
D VVPV +F L S+ GF++ +DV +VP+S
Sbjct: 156 NDGVVPVQNKLFLNEDYFNFDLSASKISQQGFNF----INQTVSTRTIDVPLVPESGGVT 211
Query: 179 VSVSYSRPSKGTIDLFSGPALQMSSHFSPLDREARVLRYXXXXXXXXXXXXIRYASRKAY 238
++ + PA+Q+S P +REARVLRY IRYASRKAY
Sbjct: 212 AEMTNTE----------TPAVQLS----PAEREARVLRYREKRKNRKFEKTIRYASRKAY 257
Query: 239 AETRPRIKGRFAKRTD 254
AE RPRIKGRFAKRTD
Sbjct: 258 AEMRPRIKGRFAKRTD 273
>AT1G73870.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:27779214-27780522 FORWARD LENGTH=392
Length = 392
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 27/45 (60%)
Query: 209 DREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRT 253
+REARVLRY IRY RK AE RPRIKGRF KRT
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRT 388