Miyakogusa Predicted Gene

Lj0g3v0340779.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0340779.1 tr|Q7XJW6|Q7XJW6_ORYSJ OSJNBa0016O02.4 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0016O02.4
PE,34.94,2e-18,seg,NULL; coiled-coil,NULL; Ipi1_N,IPI1-like domain;
TESTIS EXPRESSED GENE 10-RELATED,NULL; UNCHARAC,CUFF.23328.1
         (473 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06350.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   327   1e-89
AT5G27010.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   280   2e-75

>AT5G06350.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:1938781-1944197 FORWARD LENGTH=877
          Length = 877

 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/465 (39%), Positives = 277/465 (59%), Gaps = 13/465 (2%)

Query: 2   DNQELITSLLMAYIFNAMTHLAVEIRIMAFDFLDLVLDFYPPSFSSNAEKVFQNYEDILR 61
           DNQ L+ SLLM YIF+AM H A+++R+MAF F  LV++FYPP+FS +AEK+ +NY+DI++
Sbjct: 142 DNQGLMVSLLMPYIFSAMAHSAIDVRLMAFKFFHLVVEFYPPTFSLDAEKILENYKDIIQ 201

Query: 62  KNKYYLQDKGKLKDALTGLVRCLSLLPWNKVETDLHNKDDTGERVLHAFEADMSMNSIGI 121
           KN +Y++DK KLK AL+GL  CLS+LP ++ +T    K  +    L  +E D + + +  
Sbjct: 202 KNHFYVEDKSKLKVALSGLSHCLSVLPCDESDTKSQKKGPSQNETLLTYEQDATKDCVRY 261

Query: 122 SHIIQKLKDLVPVLVNSFQEFIQSAHAMASLEGKSFSCMSSILRSIDLIVRSFVYGTDTK 181
           +H+ Q+LK++V VL+N FQ+FI   HA    +  SF C+  ILRSI   ++  +     +
Sbjct: 262 AHVYQRLKEVVAVLINCFQDFIPLIHAPRGFDAHSFDCIQHILRSIGYAIKFSIRRHKQR 321

Query: 182 SES--PSSQGGADVAAWDITISSAXXXXXXXXXXXNPVHHLSEXXXXXXXXXNMAIAKIF 239
             +  P+S+    +   D  I+S            +P ++L           N  + +IF
Sbjct: 322 QTAWRPASE-EVTLMILDQDIASMLLKKLLGSFPLDPENNLYGKGDDKYFKLNSVLTEIF 380

Query: 240 FEINEWICLPPDLLDKFLEFLENALLGKFCKVAQSGKAVWEKHLVELISFIPKFVSRGAS 299
            E++EW  LP DL +++LEF+EN LLGK  +  +  K + EK L+ L+ F+PK + R   
Sbjct: 381 LEVSEWSHLPTDLSNRYLEFIENTLLGKITRSIRLRKDIHEKTLLALLPFLPKLILRVDR 440

Query: 300 YWTSHLLQAFTQTFRESKPGSLLKLACLSTIEDMLTPIQSLLSLEASNAENSELQDSLVA 359
            W  +LL+AFT TF + KP S LKLAC+ST+ DM+ P   +L   AS+      Q   VA
Sbjct: 441 DWRDNLLEAFTITFSDCKPESKLKLACISTVRDMIIPNGDILYPNASDPTVHYYQ---VA 497

Query: 360 WIRELPLLLIQLGDKRPDCSLIVLRLQLRIGQCALLNSSLVCMYDNMQYSLQDFYCTYQD 419
           W+ +LP LL QLG++ P  + +VL+L L +G+   LN+S  C  D     +++F+   Q 
Sbjct: 498 WVNKLPSLLNQLGNEHPVSTQVVLQLLLDLGRVGCLNASPTCEDD-----IRNFFSLCQG 552

Query: 420 GGQICYGPFLRLPRESQEISLCCLYYFSYLDF--PFLKSIACCGL 462
            G +  GPF  LPRE+QE++LC LYYF+   F  P +K+I  C L
Sbjct: 553 EGDVPGGPFASLPREAQELALCFLYYFTTDKFSSPMMKAIVSCCL 597


>AT5G27010.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:9503315-9507569 REVERSE LENGTH=863
          Length = 863

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/463 (36%), Positives = 252/463 (54%), Gaps = 25/463 (5%)

Query: 3   NQELITSLLMAYIFNAMTHLAVEIRIMAFDFLDLVLDFYPPSFSSNAEKVFQNYEDILRK 62
           N+ L+ S LM YIF AMT  ++E+R+MAF F  LVL+FY P+FS  AEK+ +NY+D++  
Sbjct: 143 NKGLMVSSLMPYIFTAMTKSSIEVRLMAFKFFRLVLEFYSPTFSLYAEKILENYKDVIHN 202

Query: 63  NKYYLQDKGKLKDALTGLVRCLSLLPWNKVETDLHNKDDTGERVLHAFEADMSMNSIGIS 122
           N +Y+QDK KLK  L GL  CLSLLP ++ + +   K       L A E D +   +  +
Sbjct: 203 NHFYIQDKKKLKVVLLGLADCLSLLPCDQSDNESKKKGLLQYETLLACEQDAAKECVRFA 262

Query: 123 HIIQKLKDLVPVLVNSFQEFIQSAHAMASLEGKSFSCMSSILRSIDLIVR-SFVYGTDTK 181
           H+   LK++V VL+N FQ+F+   HA   +  +SF C+  ILRSI   ++ S    T   
Sbjct: 263 HVSGILKEIVAVLINCFQDFLPLIHASQRINKESFDCIRHILRSIGYAIKFSIRRHTQRH 322

Query: 182 SESPSSQGGADVAAWDITISSAXXXXXXXXXXXNPVHHLSEXXXXXXXXXNMAIAKIFFE 241
           ++   S     +   D  I+S            N  ++ S          N  + +IF E
Sbjct: 323 TKWLPSPEENTLMILDRDIASMLSKKLLGSFPLNHENNFS-------VENNGVLTEIFLE 375

Query: 242 INEWICLPPDLLDKFLEFLENALLGKFCKVAQSGKAVWEKHLVELISFIPKFVSRGASYW 301
           ++EW  LP DL ++FLEF+ENALLGK  +         +K L+ L+ F+PK + R     
Sbjct: 376 VSEWSHLPCDLSNRFLEFIENALLGKITRSNS-----LDKTLLALLPFVPKLLLRVDRDR 430

Query: 302 TSHLLQAFTQTFRESKPGSLLKLACLSTIEDMLTPIQSLLSLEASNAENSELQDSLVAWI 361
             +L+QAFT TF   KP S LKLAC+S ++D++ P   +L        N +      AW+
Sbjct: 431 RDNLMQAFTITFNNCKPESSLKLACISVVKDLIIPNGDILYPNDPTVNNYQR-----AWV 485

Query: 362 RELPLLLIQLGDKRPDCSLIVLRLQLRIGQCALLNSSLVCMYDNMQYSLQDFYCTYQDGG 421
            +LP LL QLGDK    + +VL+L L + +   LN+S        +  ++ F+  +   G
Sbjct: 486 NKLPSLLNQLGDKHHVSTKVVLQLLLDLARVGCLNAS-----PTFEEEIRSFFIPFHGEG 540

Query: 422 QICYGPFLRLPRESQEISLCCLYYFSYLDF--PFLKSIACCGL 462
           ++  GPF+ LPRE QE++LC LYYF   +F  P LK+I  C L
Sbjct: 541 EVPGGPFVSLPREVQEVALCFLYYFIIDNFSSPMLKAIVSCCL 583