Miyakogusa Predicted Gene

Lj0g3v0340219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0340219.1 Non Chatacterized Hit- tr|K0RQF1|K0RQF1_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,27.23,2e-16,Rhomboid-like,NULL; Rhomboid,Peptidase S54, rhomboid
domain; seg,NULL; no description,NULL; SUBFAMIL,CUFF.23275.1
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59520.1 | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein 13...   414   e-116
AT3G17611.1 | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14...    50   1e-06
AT3G58460.1 | Symbols: ATRBL15, RBL15 | RHOMBOID-like protein 15...    50   2e-06
AT3G58460.2 | Symbols: RBL15 | RHOMBOID-like protein 15 | chr3:2...    50   2e-06

>AT3G59520.1 | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein 13 |
           chr3:21992054-21992863 FORWARD LENGTH=269
          Length = 269

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/271 (74%), Positives = 233/271 (85%), Gaps = 2/271 (0%)

Query: 1   MGKPLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHWRVITSAFS 60
           MG+PLFY+I+EKPATS ++ +CSVIWF IQKK+IGYS VGLSYETAIEG +WR+ITSA S
Sbjct: 1   MGRPLFYDIIEKPATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIEGHYWRMITSALS 60

Query: 61  HISVIHLVFNLSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXXAMYHLLIQRFK 120
           HISV+HLVFN+SALW LGVVEQL H+GLG  YYL YT             +YHLLI RFK
Sbjct: 61  HISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFK 120

Query: 121 IEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           I+YFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFG LSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIVLVFVLSLKRSGVLELNFLEIESVT 240
           SFLGHLSGI+VGYAI+WGLI GM+NYWAL++LGWIV+VFV SLK+SG  + +FLEIES+T
Sbjct: 181 SFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESLT 240

Query: 241 DPSLPSVRFLASGNGRTLQMSALPDGNIDLV 271
           D SLPSVRF+  GNGRTLQ SA+P   +++V
Sbjct: 241 DASLPSVRFI--GNGRTLQASAVPLSGVEVV 269


>AT3G17611.1 | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14 |
           chr3:6024946-6026173 FORWARD LENGTH=334
          Length = 334

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 53  RVITSAFSHISVIHLVFNLSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXXAMY 112
           R+  SAF H++  HLV+N+ +L   G+  +   +G      + +T            A  
Sbjct: 78  RLFLSAFYHVNEPHLVYNMMSLLWKGIKLETS-MGSSEFASMVFTLIGMSQGVTLLLAKS 136

Query: 113 HLLIQRFKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIF 172
            LL+  +   Y+    AVG+S V+F    +L+  Q      ++G L +P  +A +  LI 
Sbjct: 137 LLLLFDYDRAYYNEY-AVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAELIL 193

Query: 173 TSIIVPQASFLGHLSGIVVG 192
             + VP ASFLGHL GI+ G
Sbjct: 194 VQMFVPNASFLGHLGGILAG 213


>AT3G58460.1 | Symbols: ATRBL15, RBL15 | RHOMBOID-like protein 15 |
           chr3:21623374-21626348 REVERSE LENGTH=403
          Length = 403

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 50  QHWRVITSAFSHISVIHLVFNLSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXX 109
           Q +R  T+   H S++H++FN+ AL  +G   +L+ + +G    L  T            
Sbjct: 63  QVYRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTN----- 114

Query: 110 AMYHLLIQR-------FKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
           A+ HLLI         ++ ++     A+G+S ++F  + I +     +   +FG  ++P 
Sbjct: 115 AVLHLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPA 174

Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIH 201
              P+  LI   +++   S LGHL GI+ G++ ++GL +
Sbjct: 175 KLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFN 213


>AT3G58460.2 | Symbols: RBL15 | RHOMBOID-like protein 15 |
           chr3:21623374-21626642 REVERSE LENGTH=426
          Length = 426

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 50  QHWRVITSAFSHISVIHLVFNLSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXX 109
           Q +R  T+   H S++H++FN+ AL  +G   +L+ + +G    L  T            
Sbjct: 86  QVYRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTN----- 137

Query: 110 AMYHLLIQR-------FKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
           A+ HLLI         ++ ++     A+G+S ++F  + I +     +   +FG  ++P 
Sbjct: 138 AVLHLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPA 197

Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIH 201
              P+  LI   +++   S LGHL GI+ G++ ++GL +
Sbjct: 198 KLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFN 236