Miyakogusa Predicted Gene

Lj0g3v0339979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0339979.1 NODE_44999_length_815_cov_33.947239.path1.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73470.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   198   1e-51
AT1G73470.2 | Symbols:  | unknown protein; Has 72 Blast hits to ...   197   2e-51
AT1G73470.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   192   9e-50

>AT1G73470.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 72 Blast hits to 72 proteins in 35
           species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi -
           0; Plants - 22; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:27625208-27627604 FORWARD
           LENGTH=351
          Length = 351

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 113/134 (84%)

Query: 4   KVGVEDLRSIFLKGGGIFTLAKIYQLLARKLSGKVLVEAANYQVKKEIMKKGGQLAMINL 63
           +VG  +++S+ LKGGG+ T AK+YQLLA+KLSGKV +EAANYQ++KE++KKGGQ A INL
Sbjct: 217 QVGATEVQSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINL 276

Query: 64  ESRTALLAAKQGFLGAASRYLGFRSMITLLGPVLWGTFLADLVIQMLGTDYSRILRTIYA 123
           ESR ALLAAK GF GAASRY+G ++ + LLGP++WGT LADLVIQML TDY+RILR IYA
Sbjct: 277 ESRAALLAAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYA 336

Query: 124 LAQIRAIRTYRLPS 137
            AQIR  RTYRLP 
Sbjct: 337 FAQIRITRTYRLPC 350


>AT1G73470.2 | Symbols:  | unknown protein; Has 72 Blast hits to 72
           proteins in 35 species: Archae - 0; Bacteria - 50;
           Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:27625853-27627604 FORWARD LENGTH=248
          Length = 248

 Score =  197 bits (501), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 113/134 (84%)

Query: 4   KVGVEDLRSIFLKGGGIFTLAKIYQLLARKLSGKVLVEAANYQVKKEIMKKGGQLAMINL 63
           +VG  +++S+ LKGGG+ T AK+YQLLA+KLSGKV +EAANYQ++KE++KKGGQ A INL
Sbjct: 114 QVGATEVQSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINL 173

Query: 64  ESRTALLAAKQGFLGAASRYLGFRSMITLLGPVLWGTFLADLVIQMLGTDYSRILRTIYA 123
           ESR ALLAAK GF GAASRY+G ++ + LLGP++WGT LADLVIQML TDY+RILR IYA
Sbjct: 174 ESRAALLAAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYA 233

Query: 124 LAQIRAIRTYRLPS 137
            AQIR  RTYRLP 
Sbjct: 234 FAQIRITRTYRLPC 247


>AT1G73470.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages. | chr1:27625208-27627604 FORWARD
           LENGTH=357
          Length = 357

 Score =  192 bits (487), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 113/140 (80%), Gaps = 6/140 (4%)

Query: 4   KVGVEDLRSIFLKGGGIFTLAKIYQLLARKLSGKVLVEAANYQVKKEIMKKGGQLAMINL 63
           +VG  +++S+ LKGGG+ T AK+YQLLA+KLSGKV +EAANYQ++KE++KKGGQ A INL
Sbjct: 217 QVGATEVQSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINL 276

Query: 64  ESRTALLAAKQGFLGAASRYLGFRSMITLLGPVLWGTFLADLVIQMLGTDYSRILRTIYA 123
           ESR ALLAAK GF GAASRY+G ++ + LLGP++WGT LADLVIQML TDY+RILR IYA
Sbjct: 277 ESRAALLAAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYA 336

Query: 124 LA------QIRAIRTYRLPS 137
            A      QIR  RTYRLP 
Sbjct: 337 FAQDCFVLQIRITRTYRLPC 356