Miyakogusa Predicted Gene

Lj0g3v0338939.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0338939.1 Non Chatacterized Hit- tr|I1JXD0|I1JXD0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23960
PE,89.72,0,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Membrane
protein,Tapt1/CMV receptor; DUF747,Membrane prote,CUFF.23183.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67960.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Membrane p...   494   e-140

>AT1G67960.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Membrane
           protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447
           Blast hits to 428 proteins in 176 species: Archae - 0;
           Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49;
           Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
           | chr1:25480808-25484176 REVERSE LENGTH=624
          Length = 624

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/321 (73%), Positives = 272/321 (84%), Gaps = 1/321 (0%)

Query: 3   STMELSDFGCFLIMSCGVALLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFNG 62
           S  ELSD  CFL+++ G  LL RTDISLIYHMIRGQ TIKLYVVYN+LEIFD+LCQSF G
Sbjct: 304 SASELSDLACFLVLATGTILLGRTDISLIYHMIRGQSTIKLYVVYNILEIFDRLCQSFCG 363

Query: 63  DVLQTLFHSAEGLANSPPESMRFWIWRFVSDQALAMAASIVHSFILLAQAITLSTCIVAH 122
           DV   LF SA+GL+ SPPE +RF  WRFVSD AL MAASI+HSFILLAQAITLSTCIVAH
Sbjct: 364 DVFGALFSSAKGLSISPPEKLRFSTWRFVSDLALTMAASILHSFILLAQAITLSTCIVAH 423

Query: 123 NNALFALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAEN 182
           NNAL ALLVSNNFAEIKS+VFKR+SKDN+  LVY DS+ERFHISAF++ VLAQNILE+E 
Sbjct: 424 NNALLALLVSNNFAEIKSSVFKRFSKDNIHGLVYADSIERFHISAFLVSVLAQNILESEG 483

Query: 183 PWFESFLTNVLLVYVCEMIIDIIKHSFIAKFNDIKPIVYSEFLEDLCKQTLNLQTEGVKK 242
            WF +F+ N   V+ CEM+IDIIKHSF+AKFNDIKPI YSEFL+ LC+QTLN++ E  K 
Sbjct: 484 AWFGNFIYNATTVFFCEMMIDIIKHSFLAKFNDIKPIAYSEFLQALCEQTLNIRPEDRKT 543

Query: 243 NLTFVPLAPACVVIRVLTPVYAANLPPNPLPWRLFWILLFSATTYVMLTSLKVLIGMGIQ 302
           NLTFVPLAPACVVIRVLTPVYAA+LP +PLPWR+ W+++    TY+MLTSLKVLIGMG++
Sbjct: 544 NLTFVPLAPACVVIRVLTPVYAAHLPYSPLPWRMLWMVILFVITYIMLTSLKVLIGMGLR 603

Query: 303 KYATWYINRCRRRK-HHLHAD 322
           K+ATWYINRCRRR   HLH D
Sbjct: 604 KHATWYINRCRRRNSSHLHND 624