Miyakogusa Predicted Gene

Lj0g3v0338819.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0338819.1 Non Chatacterized Hit- tr|F6XUI4|F6XUI4_CIOIN
Uncharacterized protein OS=Ciona intestinalis PE=4
SV=,36.89,0.000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Rab3
GTPase-activating protein catalytic subunit; seg,NUL,CUFF.23173.1
         (475 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   336   2e-92
AT5G55060.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   248   6e-66

>AT5G55060.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 15 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins
           in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117;
           Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes -
           33 (source: NCBI BLink). | chr5:22342079-22346400
           FORWARD LENGTH=662
          Length = 662

 Score =  336 bits (862), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/396 (48%), Positives = 259/396 (65%), Gaps = 35/396 (8%)

Query: 26  MEAHATSLVSKARTAFHSAAAKAERVLMDFKSDLGEDSDKQSRHQSGRLQGDDSAQKNEM 85
           ME    SLVSKARTAF+SAAAKAERV  D KSD      ++   QS R   +DS ++NE+
Sbjct: 1   METAPPSLVSKARTAFNSAAAKAERVFTDLKSD------REEEKQSTR-NVNDSQEENEV 53

Query: 86  ESKLFNDLKHIKWRPLHIGKKQDWQDRIKNFRKGRKEIEDTDKVGDANITADALYDEDWS 145
           +++         WR  HI KKQ+WQ+++KN R GRKE+ED DKV D+ + A   YDE++ 
Sbjct: 54  KTQ--------GWRTAHIRKKQEWQNKLKNLRIGRKEVEDQDKVEDSAMAA-PFYDENFY 104

Query: 146 IVNVRNDLNAKASEAILPELRRSGLAGTEAIPSVEGLTVATEDPIPPSSVLKQLALAVEA 205
           I+  + +  AKAS+                   VE L     + IP +SV+KQLA+A+EA
Sbjct: 105 ILKAKQEQEAKASDVGC---------------MVESLNAVDANSIPLASVVKQLAVAIEA 149

Query: 206 GRKTHSMKDFVASSGGSSPALEREGLSLSAIKALVLREKEEKLSSEFCSNEKVVYLINSL 265
           G++  ++KDFVASSG SSP  ER GLSLSA+K+LVL EKE+KL  +    +K+V LIN+L
Sbjct: 150 GKRAKNVKDFVASSGSSSPVRERGGLSLSAVKSLVLGEKEDKLGFDSGDEDKLVSLINAL 209

Query: 266 FNPEGEFLRRKINSDPEE-IALTSLPRDIHSAPPESLVVKLAEVIGNFKTVRKMALFWCS 324
           FN +  FL RKI SD E     +S  +D+H+APP S VVKLAEVIG+F T R+MALFWC 
Sbjct: 210 FNVDSGFLSRKIVSDLESPTNRSSFAKDLHAAPPSSFVVKLAEVIGSFTTPRRMALFWCR 269

Query: 325 VVTELRKLWSEDKHLPGXXXXXXXXLKSCLLYQQFQVINCCISRKRRHIIATEAVDSMVM 384
           VV ELR+ W+E+KH+P         LKSCLL+Q  QVINCC++RK R++ A+EA+D+++ 
Sbjct: 270 VVEELRRFWNEEKHIPWIPLDNNPDLKSCLLHQWLQVINCCLARKARNVAASEALDAVMR 329

Query: 385 EANSNTLKSGNHSDRTSATPVLYARISTGELVLRLG 420
           +A+S   KS       S   +LYA+ ++GEL+LRLG
Sbjct: 330 QASSANEKSDVSESMGS---LLYAKSNSGELILRLG 362


>AT5G55060.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G58510.1). | chr5:22343079-22346400 FORWARD
           LENGTH=569
          Length = 569

 Score =  248 bits (633), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 138/286 (48%), Positives = 188/286 (65%), Gaps = 19/286 (6%)

Query: 136 ADALYDEDWSIVNVRNDLNAKASEAILPELRRSGLAGTEAIPSVEGLTVATEDPIPPSSV 195
           A   YDE++ I+  + +  AKAS+                   VE L     + IP +SV
Sbjct: 2   AAPFYDENFYILKAKQEQEAKASDVGC---------------MVESLNAVDANSIPLASV 46

Query: 196 LKQLALAVEAGRKTHSMKDFVASSGGSSPALEREGLSLSAIKALVLREKEEKLSSEFCSN 255
           +KQLA+A+EAG++  ++KDFVASSG SSP  ER GLSLSA+K+LVL EKE+KL  +    
Sbjct: 47  VKQLAVAIEAGKRAKNVKDFVASSGSSSPVRERGGLSLSAVKSLVLGEKEDKLGFDSGDE 106

Query: 256 EKVVYLINSLFNPEGEFLRRKINSDPEE-IALTSLPRDIHSAPPESLVVKLAEVIGNFKT 314
           +K+V LIN+LFN +  FL RKI SD E     +S  +D+H+APP S VVKLAEVIG+F T
Sbjct: 107 DKLVSLINALFNVDSGFLSRKIVSDLESPTNRSSFAKDLHAAPPSSFVVKLAEVIGSFTT 166

Query: 315 VRKMALFWCSVVTELRKLWSEDKHLPGXXXXXXXXLKSCLLYQQFQVINCCISRKRRHII 374
            R+MALFWC VV ELR+ W+E+KH+P         LKSCLL+Q  QVINCC++RK R++ 
Sbjct: 167 PRRMALFWCRVVEELRRFWNEEKHIPWIPLDNNPDLKSCLLHQWLQVINCCLARKARNVA 226

Query: 375 ATEAVDSMVMEANSNTLKSGNHSDRTSATPVLYARISTGELVLRLG 420
           A+EA+D+++ +A+S   KS       S   +LYA+ ++GEL+LRLG
Sbjct: 227 ASEALDAVMRQASSANEKSDVSESMGS---LLYAKSNSGELILRLG 269