Miyakogusa Predicted Gene

Lj0g3v0337679.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0337679.2 Non Chatacterized Hit- tr|D8QPI1|D8QPI1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,44.64,0.00000000005,Homeodomain-like,Homeodomain-like; no
description,Homeodomain-like; Homeobox,Homeodomain;
HOMEOBOX_2,CUFF.23085.2
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11270.1 | Symbols: OCP3 | overexpressor of cationic peroxida...   164   3e-41

>AT5G11270.1 | Symbols: OCP3 | overexpressor of cationic peroxidase
           3 | chr5:3595557-3597076 REVERSE LENGTH=354
          Length = 354

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 109/161 (67%), Gaps = 5/161 (3%)

Query: 1   MKKLARALKTGRRKTSIKSLAAELCLDRAXXXXXXXXXXXXXXXXXXXXXDE-PPATVVE 59
           +K+LA ALK GRRKTSIK+LAAE+CLDRA                     DE PP    E
Sbjct: 191 LKRLAYALKAGRRKTSIKNLAAEVCLDRAYVLELLRDPPPKLLMLSATLPDEKPPVAAPE 250

Query: 60  -SKLGETIINETSLDSGESEPKAQV---PIHTMQRSWSAQKRLKKAHVDTLERVYRRSKR 115
            S    + +   S +    EPK +V    +H MQ+ WSAQKR+KKAH++TLE+VYRRSKR
Sbjct: 251 NSSPDPSPVESLSAEDVVVEPKEKVKDEAVHVMQQRWSAQKRVKKAHIETLEKVYRRSKR 310

Query: 116 PTNTMISSIVHVTNIPRRKVVKWFEDKRAEDGVPDRRLPYQ 156
           PTN ++SSIV VTN+PR++V+KWFEDKRAEDGVPD+R PYQ
Sbjct: 311 PTNAVVSSIVQVTNLPRKRVLKWFEDKRAEDGVPDKRAPYQ 351