Miyakogusa Predicted Gene

Lj0g3v0336579.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336579.2 Non Chatacterized Hit- tr|I1L454|I1L454_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30192
PE,85.76,0,Vps26,Vacuolar protein sorting-associated protein 26; DOWN
SYNDROME CRITICAL REGION PROTEIN 3,NULL; ,CUFF.23024.2
         (316 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48550.1 | Symbols:  | Vacuolar protein sorting-associated pr...   482   e-136
AT1G48550.2 | Symbols:  | Vacuolar protein sorting-associated pr...   466   e-132

>AT1G48550.1 | Symbols:  | Vacuolar protein sorting-associated
           protein 26 | chr1:17950792-17952645 REVERSE LENGTH=327
          Length = 327

 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/316 (72%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 2   SVELKLSRSNRIYRPSEALEGKIIIKTQSSISHYGIRLTLKGSVNLQVRGGSAGVVESFY 61
           +V +KLSRSNRIYR SE +EGKI+IK+ +SISH  IRL++ GSVNLQVRGGSAGV+ESFY
Sbjct: 6   TVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESFY 65

Query: 62  GVIKPIPIVNRTVEVKSSGKIGSGTTEIPFSMNLKQRDENL-ERFYETFHGSDINIQYLL 120
           GVIKPI IV +T+EVKSSGKI  GTTEIPFS+NL++  E + E+FYETFHG++INIQYLL
Sbjct: 66  GVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYLL 125

Query: 121 TADISRGYLHKSLSATTEFIMESDKADLLQRPVSPETVIFYITQDTQRHPLLPEIKSGGF 180
           TADI RGYLHK LSAT EFI+ES + DL +RP+ PE VIFYITQDTQRHPLLP+IK+GGF
Sbjct: 126 TADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGGF 185

Query: 181 RVTGKICTQCSLSSPINGELTVEASAVPIQSIELQLFRVESVLFGEKIVNETSLIQTTQI 240
           RVTGK+ TQCSL  P++GELTVEAS+VPI SI++ L RVES++ GE+IV ETSLIQ+TQI
Sbjct: 186 RVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQI 245

Query: 241 ADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKVAIVISFQSELAKLPRKSDSRTPR 300
           ADGDVCRN+TLPIYV+LPRLL CP+++AGPFS+EFKV I ISF+S+LAK   KSD   PR
Sbjct: 246 ADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTAPR 305

Query: 301 LWLAMETLPLELVRSK 316
           LW+A+E LPLELVR+K
Sbjct: 306 LWMALERLPLELVRTK 321


>AT1G48550.2 | Symbols:  | Vacuolar protein sorting-associated
           protein 26 | chr1:17950792-17952645 REVERSE LENGTH=324
          Length = 324

 Score =  466 bits (1199), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/316 (70%), Positives = 271/316 (85%), Gaps = 4/316 (1%)

Query: 2   SVELKLSRSNRIYRPSEALEGKIIIKTQSSISHYGIRLTLKGSVNLQVRGGSAGVVESFY 61
           +V +KLSRSNRIYR SE +EGKI+IK+ +SISH  IRL++ GSVNLQVRGGSAGV+ESFY
Sbjct: 6   TVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESFY 65

Query: 62  GVIKPIPIVNRTVEVKSSGKIGSGTTEIPFSMNLKQRDENL-ERFYETFHGSDINIQYLL 120
           GVIKPI IV +T+EVKSSGKI  GTTEIPFS+NL++  E + E+FYETFHG++INIQ   
Sbjct: 66  GVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQ--- 122

Query: 121 TADISRGYLHKSLSATTEFIMESDKADLLQRPVSPETVIFYITQDTQRHPLLPEIKSGGF 180
            ++I RGYLHK LSAT EFI+ES + DL +RP+ PE VIFYITQDTQRHPLLP+IK+GGF
Sbjct: 123 VSNIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGGF 182

Query: 181 RVTGKICTQCSLSSPINGELTVEASAVPIQSIELQLFRVESVLFGEKIVNETSLIQTTQI 240
           RVTGK+ TQCSL  P++GELTVEAS+VPI SI++ L RVES++ GE+IV ETSLIQ+TQI
Sbjct: 183 RVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQI 242

Query: 241 ADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKVAIVISFQSELAKLPRKSDSRTPR 300
           ADGDVCRN+TLPIYV+LPRLL CP+++AGPFS+EFKV I ISF+S+LAK   KSD   PR
Sbjct: 243 ADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTAPR 302

Query: 301 LWLAMETLPLELVRSK 316
           LW+A+E LPLELVR+K
Sbjct: 303 LWMALERLPLELVRTK 318