Miyakogusa Predicted Gene

Lj0g3v0335479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0335479.1 Non Chatacterized Hit- tr|D8TFT6|D8TFT6_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,23.53,4e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.22916.1
         (424 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48770.1 | Symbols:  | DNA binding;ATP binding | chr3:1807926...   392   e-109
AT3G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    71   1e-12

>AT3G48770.1 | Symbols:  | DNA binding;ATP binding |
           chr3:18079261-18086817 REVERSE LENGTH=1899
          Length = 1899

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/424 (48%), Positives = 271/424 (63%), Gaps = 7/424 (1%)

Query: 1   MDDKWNQGILECIPTAFMDAFKTLVIGSDEAPVSSLTQMFRFLPIESSPYEKLNHVRDQI 60
           +DD WNQGIL C+P AF++AF +LV  +D APVSSL   FRFLP++ S Y KLN VR+ I
Sbjct: 546 LDDIWNQGILNCVPLAFLNAFTSLVKTTD-APVSSLLPAFRFLPVKESNYAKLNVVRESI 604

Query: 61  KAKLLEEAIVPIETYTKQKHFYKPREVGRLLPEFWNILSKARSEQVYLLDLSSHDGRKIL 120
           +A++  E IVP  ++  QK FYKP EVGRL+P FW+IL KA SE   L ++SSH G  IL
Sbjct: 605 RARVCAEEIVPSISHQGQKFFYKPCEVGRLIPTFWDILEKAGSEGASLQNISSH-GIYIL 663

Query: 121 SSAFDRSEYDRILNFLEVKPVNVDWYAKCIQSSNLVDGVSEEVYLELLLFVTENWLTMFK 180
           +SAFDR+EYD +LNFL +K V+ +WY KCIQ  +LV  VSE  Y+E+LLF+ ENW   F+
Sbjct: 664 NSAFDRTEYDNVLNFLGLKQVSNEWYVKCIQGCDLVTSVSEATYVEVLLFIAENWQCRFQ 723

Query: 181 DSKMVRVPLIKYVGPDGSLSHFSFYDCTQCSKKVVLADSSESCPCSWLIDWNKEFACSSN 240
           ++ M +VPLIKYV   G     S            L  S+E    +WL+DWN EF C SN
Sbjct: 724 NTNMGKVPLIKYVVQKG----VSSLSSLGGFSPRTLCLSTEKNQ-AWLLDWNDEFRCMSN 778

Query: 241 KFFMPEITQEAILQFSQKRTLLDLLEDQVHVKALRLYTFANGLCNSIKNNSKRAIAYAHF 300
             FMP  T+ A+   S+K  +   L++ V V  L +  +A  L  ++  + +  +AYAHF
Sbjct: 779 FVFMPPTTRTALKVCSKKEIIHTWLKENVKVITLSVSDYAKHLRENLNGDKRLVVAYAHF 838

Query: 301 LYHSFNKRYLSSREVDALCGSMPLVDNYGSVTECRNGVLVPANVSKWADLIVTNPWRSEN 360
           L+HS +K +LS  E    C  MPLVDNYG+V   RNGVLVPA+  KW  L+ +NPWR   
Sbjct: 839 LHHSISKDFLSKEEAGKCCKDMPLVDNYGNVNISRNGVLVPASAGKWVSLVGSNPWRHSG 898

Query: 361 YVELGKEYLRSSHYAGQYTGPEKLIEFLKKHADASDIPYISPPNAGFSAVETPLTKDNTF 420
           Y+EL +EYL S+ +AG  +  + L+ FLK   +A DIP I PPN    A+  PLTK+N  
Sbjct: 899 YIELSEEYLLSNRFAGLRSNKKDLLGFLKSSVEAGDIPDIEPPNVAIPALSGPLTKENVL 958

Query: 421 LLLD 424
           LLL+
Sbjct: 959 LLLE 962


>AT3G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: DNA binding;ATP binding (TAIR:AT3G48770.1); Has 66
           Blast hits to 55 proteins in 9 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:10417906-10419149 REVERSE LENGTH=246
          Length = 246

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 9/71 (12%)

Query: 1   MDDKWNQGILECIPTAFMDAFKTLVIGSDEAPVSSLTQMFRFLPIESSPYEKLNHVRDQI 60
           +DD WNQGIL C+P+AF++AF +LV  +D          F FLP++ S YE+LN VR+ I
Sbjct: 182 LDDMWNQGILSCVPSAFVNAFTSLVKKTD---------AFSFLPVKVSNYEELNDVRESI 232

Query: 61  KAKLLEEAIVP 71
            A++L E  VP
Sbjct: 233 MARVLAEGNVP 243