Miyakogusa Predicted Gene

Lj0g3v0335209.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0335209.1 Non Chatacterized Hit- tr|F6HXG9|F6HXG9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.9,1e-17,VQ,VQ; seg,NULL,CUFF.22903.1
         (262 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28280.1 | Symbols:  | VQ motif-containing protein | chr1:988...   107   7e-24
AT1G28280.2 | Symbols:  | VQ motif-containing protein | chr1:988...   107   7e-24
AT5G53830.1 | Symbols:  | VQ motif-containing protein | chr5:218...    99   3e-21
AT3G15300.1 | Symbols:  | VQ motif-containing protein | chr3:514...    98   6e-21
AT2G33780.1 | Symbols:  | VQ motif-containing protein | chr2:142...    58   5e-09

>AT1G28280.1 | Symbols:  | VQ motif-containing protein |
           chr1:9886652-9887395 REVERSE LENGTH=247
          Length = 247

 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 88/177 (49%), Gaps = 19/177 (10%)

Query: 79  RSDSNNPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXX---XXXXRNFNI 135
           RS+S NPYPTTFVQADT++FK VVQMLTG                           +F+I
Sbjct: 48  RSESGNPYPTTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSI 107

Query: 136 PPIKTAPIKKQ------GFKLYERRNSLKNNLILNTMMPNXXXXXXXXXPRQAAEXXXXX 189
           PPIK  P KKQ      GF+LYERRNS+K NL +N + P          PR+  E     
Sbjct: 108 PPIKAVPNKKQSSSSASGFRLYERRNSMK-NLKINPLNPVFNPVNSAFSPRK-PEILSPS 165

Query: 190 XXXXXXXXXXXVTPLNDDALGNSSSS--------EEDKAIAEKGFYLHPSPVSTPRD 238
                      VTPL  D    S SS         E+KA+ E+GFYLHPSP +TP D
Sbjct: 166 ILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMD 222


>AT1G28280.2 | Symbols:  | VQ motif-containing protein |
           chr1:9886297-9887395 REVERSE LENGTH=243
          Length = 243

 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 88/177 (49%), Gaps = 19/177 (10%)

Query: 79  RSDSNNPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXX---XXXXRNFNI 135
           RS+S NPYPTTFVQADT++FK VVQMLTG                           +F+I
Sbjct: 48  RSESGNPYPTTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSI 107

Query: 136 PPIKTAPIKKQ------GFKLYERRNSLKNNLILNTMMPNXXXXXXXXXPRQAAEXXXXX 189
           PPIK  P KKQ      GF+LYERRNS+K NL +N + P          PR+  E     
Sbjct: 108 PPIKAVPNKKQSSSSASGFRLYERRNSMK-NLKINPLNPVFNPVNSAFSPRK-PEILSPS 165

Query: 190 XXXXXXXXXXXVTPLNDDALGNSSSS--------EEDKAIAEKGFYLHPSPVSTPRD 238
                      VTPL  D    S SS         E+KA+ E+GFYLHPSP +TP D
Sbjct: 166 ILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMD 222


>AT5G53830.1 | Symbols:  | VQ motif-containing protein |
           chr5:21857057-21857788 FORWARD LENGTH=243
          Length = 243

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 87/185 (47%), Gaps = 34/185 (18%)

Query: 84  NPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXXXXXXRNFNIPPIKTAPI 143
           NPYPTTFVQADT+TFK VVQMLTG                        +F+IPPIK    
Sbjct: 45  NPYPTTFVQADTSTFKQVVQMLTGSSTDTTTGKHHEAPSPVNNNNKGSSFSIPPIK---- 100

Query: 144 KKQGFKLYERRNS-----LKNNLILNT--------MMPNXXXXXXXXXPRQAAEXXXXXX 190
           K   FKLYERR +      KN+L++NT        +M           PR +        
Sbjct: 101 KTNSFKLYERRQNNNNMFAKNDLMINTLRLQNSQRLMFTGGNSSHHQSPRFSPRNSSSSE 160

Query: 191 XXXXXXXX---------XXVTPL--NDDALGNSS------SSEEDKAIAEKGFYLHPSPV 233
                              VTPL  NDD    SS      SSEEDKAIA+KGFYLHPSPV
Sbjct: 161 NILLSPSMLDFPKLGLNSPVTPLRSNDDPFNKSSPLSLGNSSEEDKAIADKGFYLHPSPV 220

Query: 234 STPRD 238
           STPRD
Sbjct: 221 STPRD 225


>AT3G15300.1 | Symbols:  | VQ motif-containing protein |
           chr3:5147551-5148210 REVERSE LENGTH=219
          Length = 219

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 86/176 (48%), Gaps = 23/176 (13%)

Query: 79  RSDSNNPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXXXXXXRNFNIPPI 138
           RSD    YPTTFVQAD+++FK VVQMLTG                        NF IPPI
Sbjct: 31  RSDH---YPTTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSGKG----NFVIPPI 83

Query: 139 KTA-PIKKQGFKLYERR------NSLKNNLILNTMM-PNXXXXXXXXXPRQAAEXXXXXX 190
           KTA P K  G KLYERR      N+LKN+L++NT+M            PR          
Sbjct: 84  KTAQPKKHSGNKLYERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSCL 143

Query: 191 XXXXXXXXXXVTPLNDDALGN--------SSSSEEDKAIAEKGFYLHPSPVSTPRD 238
                     VTPL     GN        S  SEE++ IA+KG+YLH SP+STPRD
Sbjct: 144 DFPKLALNSPVTPLKQGTNGNEGDPFDKMSPLSEEERGIADKGYYLHRSPISTPRD 199


>AT2G33780.1 | Symbols:  | VQ motif-containing protein |
           chr2:14291117-14291731 REVERSE LENGTH=204
          Length = 204

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 70/168 (41%), Gaps = 36/168 (21%)

Query: 86  YPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXXXXXXRNFNIPPIKTAPIKK 145
           Y TTF++ D ++FK VVQ+LTG                          +IPPIK    KK
Sbjct: 34  YETTFIRTDPSSFKQVVQLLTGIPKNPTHQPDPRFPPFH---------SIPPIKAVTNKK 84

Query: 146 Q--GFKLYERRNSLKNNLILNTMMPNXXXXXXXXXPRQAAEXXXXXXXXXXXXXXXXVTP 203
           Q   F+L ERRNS+K+ L +N                   E                 TP
Sbjct: 85  QSSSFRLSERRNSMKHYLNINPTH------------SGPPEILTPTILNFPALDLSPDTP 132

Query: 204 LNDDAL---GNSSSS----------EEDKAIAEKGFYLHPSPVSTPRD 238
           L  D     G+ S S          +++++I EKGFYL PSP +TPRD
Sbjct: 133 LMSDPFYRPGSFSQSPSDSKPSFDDDQERSIKEKGFYLRPSPSTTPRD 180