Miyakogusa Predicted Gene

Lj0g3v0335169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0335169.1 tr|I1L3P5|I1L3P5_SOYBN Eukaryotic translation
initiation factor 6 OS=Glycine max GN=Gma.31632 PE=3
S,95.1,0,eIF-6,Translation initiation factor IF6; Pentein,NULL;
eIF_6,Translation initiation factor IF6; tran,CUFF.22918.1
         (245 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55620.1 | Symbols: emb1624 | Translation initiation factor I...   476   e-135
AT2G39820.1 | Symbols:  | Translation initiation factor IF6 | ch...   363   e-101

>AT3G55620.1 | Symbols: emb1624 | Translation initiation factor IF6
           | chr3:20634581-20636312 FORWARD LENGTH=245
          Length = 245

 Score =  476 bits (1226), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/245 (91%), Positives = 241/245 (98%)

Query: 1   MATRLQFENNCEIGVFSKLTNAYCLVAIGGSENFYSVFETELADVIPVVKTSIGGTRIIG 60
           MATRLQFENNCE+GVFSKLTNAYCLVAIGGSENFYS FE+ELADVIP+VKTSIGGTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLL+PHT TDQELQHLRNSLPDQVVVQRIDERLSALGNCIACND+VAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTIAGNILVGSYCTISNRGGLVHPHTSVEDLDELSTLLQVP 180
           LD+ETEE+IADVLGVEVFRQTIAGNILVGSYC +SN+GG+VHPHTSVEDL+ELSTLLQVP
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240
           LVAGTVNRGSEVIAAGMTVNDWT+FCGSDTTATELSVI+S+FKLREAQPS+IVDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240

Query: 241 IDSYV 245
           ID+YV
Sbjct: 241 IDTYV 245


>AT2G39820.1 | Symbols:  | Translation initiation factor IF6 |
           chr2:16618459-16619592 FORWARD LENGTH=247
          Length = 247

 Score =  363 bits (931), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/247 (70%), Positives = 213/247 (86%), Gaps = 2/247 (0%)

Query: 1   MATRLQFENN-CEIGVFSKLTNAYCLV-AIGGSENFYSVFETELADVIPVVKTSIGGTRI 58
           MATRLQ++NN CEIGVFSKLTNAYCLV A   S NF++ +E++L  VIP+V TSIGG+  
Sbjct: 1   MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGT 60

Query: 59  IGRLCAGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTH 118
           IG LC GNKNGLLL HTITDQELQHLR+SLPD+VVVQRI+E + ALGN IACND+VAL H
Sbjct: 61  IGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVH 120

Query: 119 TDLDRETEELIADVLGVEVFRQTIAGNILVGSYCTISNRGGLVHPHTSVEDLDELSTLLQ 178
             L+++TEE+I+DVLGVEV+RQTIA N LVGSYC++SN GG+VH +T+VE++ EL+ L+Q
Sbjct: 121 PKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQ 180

Query: 179 VPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRK 238
           VPLVAGTVNRGS+VI+AG+TVNDWTAFCGSDTTA ELSV+ ++FKL ++QP  +  EMRK
Sbjct: 181 VPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRK 240

Query: 239 SLIDSYV 245
           SLID+YV
Sbjct: 241 SLIDTYV 247