Miyakogusa Predicted Gene

Lj0g3v0335059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0335059.1 Non Chatacterized Hit- tr|C5YDD7|C5YDD7_SORBI
Putative uncharacterized protein Sb06g004500
OS=Sorghu,59.7,3e-19,UPF0172,Uncharacterised protein family UPF0172;
GB DEF: HYPOTHETICAL UPF0172 PROTEIN AT5G55940,NULL;,CUFF.22886.1
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family ...    78   1e-15

>AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family
           (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208
          Length = 208

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query: 1   MQLYVRDASKNWKLVPSDGNSRFSLKEPSANLVLSDYISSEKWNNIVXXXXXXXXXXXXX 60
           MQL V+DASKNW++V +DG S+  LKEPSAN+VLSDYISSEKW ++              
Sbjct: 142 MQLCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVDDHLDDVTKDW 201

Query: 61  XNPGLFN 67
            NPGLFN
Sbjct: 202 LNPGLFN 208