Miyakogusa Predicted Gene
- Lj0g3v0334929.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0334929.1 Non Chatacterized Hit- tr|I1MF12|I1MF12_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13812
PE,71.43,2e-19,N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL; no description,NULL,CUFF.22866.1
(65 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:27... 80 2e-16
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:27... 75 1e-14
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:27... 73 5e-14
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:27... 73 5e-14
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:16... 67 3e-12
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:27... 66 4e-12
AT5G52480.2 | Symbols: | RNI-like superfamily protein | chr5:21... 55 1e-08
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21... 55 1e-08
>AT4G05475.1 | Symbols: | RNI-like superfamily protein |
chr4:2765962-2767957 REVERSE LENGTH=309
Length = 309
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 12/75 (16%)
Query: 1 MGKCCPHLQVLKFNMQETK--------GY----ECDDEAFAIAKTMPRLRHIQLLGNSLT 48
+G CP L+ LK N ++ GY ECDD+A AIA++MP+LRH+QL+GN LT
Sbjct: 178 IGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLT 237
Query: 49 NEGLLAILDGCPHLE 63
N GL AILDGCPHLE
Sbjct: 238 NTGLNAILDGCPHLE 252
>AT4G05470.1 | Symbols: | RNI-like superfamily protein |
chr4:2763256-2765351 REVERSE LENGTH=304
Length = 304
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 16/81 (19%)
Query: 1 MGKCCPHLQVLKFN----------------MQETKGYECDDEAFAIAKTMPRLRHIQLLG 44
+G CP L+ LK N + + ECDD+A AIA++MP+L H+QL+
Sbjct: 184 IGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMA 243
Query: 45 NSLTNEGLLAILDGCPHLESL 65
N LTN GL AILDGCPHLE L
Sbjct: 244 NRLTNTGLNAILDGCPHLEHL 264
>AT4G05490.1 | Symbols: | RNI-like superfamily protein |
chr4:2771044-2772252 REVERSE LENGTH=307
Length = 307
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 1 MGKCCPHLQVLKFNMQETKGYECDDEAFAIAKTMPRLRHIQLLGNSLTNEGLLAILDGCP 60
+G+ CP+L+ LK + E D++A AIA TMP L H+QL+ N LTN GL AILDGCP
Sbjct: 169 IGQACPNLKTLKLVGFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCP 228
Query: 61 HLESL 65
HLE L
Sbjct: 229 HLECL 233
>AT4G05460.1 | Symbols: | RNI-like superfamily protein |
chr4:2761106-2762400 REVERSE LENGTH=302
Length = 302
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 1 MGKCCPHLQVLKFNMQETKGYECDDEAFAIAKTMPRLRHIQLLGNSLTNEGLLAILDGCP 60
+G+CC +++ LK N K E DD+A AIA+TMP+LRH+QL GN L++ GL AILD C
Sbjct: 160 VGQCCLNMKTLKLNKHPQK--ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCS 217
Query: 61 HLESL 65
+LE L
Sbjct: 218 NLEHL 222
>AT4G03630.1 | Symbols: | RNI-like superfamily protein |
chr4:1608750-1610037 FORWARD LENGTH=220
Length = 220
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 1 MGKCCPHLQVLKFNMQETK--GYECDDEAFAIAKTMPRLRHIQLLGNSLTNEGLLAILDG 58
+G C HL+ LK N Q K G+ D +A IAK MP LR +QL GN +++ GL AI DG
Sbjct: 108 IGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRMPELRCLQLFGNRVSDVGLNAIFDG 167
Query: 59 CPHLESL 65
CPHLE L
Sbjct: 168 CPHLEHL 174
>AT4G05497.1 | Symbols: | RNI-like superfamily protein |
chr4:2777903-2778801 REVERSE LENGTH=246
Length = 246
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 1 MGKCCPHLQVLKFNMQ-ETKGYECDDEAFAIAKTMPRLRHIQLLGNSLTNEGLLAILDGC 59
+G+ CP+L+ LK N + K CD A AIA+TMP LRH+QL N L+ GL AIL+GC
Sbjct: 167 VGQSCPNLRTLKLNCTGDVKC--CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGC 224
Query: 60 PHLESL 65
PHL++L
Sbjct: 225 PHLKNL 230
>AT5G52480.2 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297529 REVERSE LENGTH=203
Length = 203
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 2 GKCCPHLQVLKFN-MQETKGYECDDEAFAIAKTMPRLRHIQLLGNSLTNEGLLAILDGCP 60
G CP+L+ L N + + D +A AIA++MP+LRH+QL GN LT GL AILDGCP
Sbjct: 60 GLSCPNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCP 119
Query: 61 HLESL 65
HLE L
Sbjct: 120 HLEHL 124
>AT5G52480.1 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297762 REVERSE LENGTH=241
Length = 241
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 2 GKCCPHLQVLKFN-MQETKGYECDDEAFAIAKTMPRLRHIQLLGNSLTNEGLLAILDGCP 60
G CP+L+ L N + + D +A AIA++MP+LRH+QL GN LT GL AILDGCP
Sbjct: 98 GLSCPNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCP 157
Query: 61 HLESL 65
HLE L
Sbjct: 158 HLEHL 162