Miyakogusa Predicted Gene

Lj0g3v0334789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334789.1 Non Chatacterized Hit- tr|D7TDH9|D7TDH9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,70.31,1e-17,seg,NULL;
coiled-coil,NULL,gene.Ljchr0_pseudomol_20120828.path1.gene34631.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (C...    71   1e-13

>AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM)
           domain-containing protein | chr1:8312199-8314740 REVERSE
           LENGTH=564
          Length = 564

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 18/127 (14%)

Query: 1   MLSLWKSAVDSSKALLLEEYELGPDALLEKVQEFEGISQATEHSYPAFILPSEDGEKGSF 60
           M+SLW+ A++SSKA++LEE +LGPD LL+KV+E EG S A EH+Y A +L + DG    +
Sbjct: 454 MISLWQRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDY 513

Query: 61  ANFEIGTEDGYPSDSLLAXXXXXXXXXXXXXXXXXXXXXXGLYDIVDSSAQPRSLPVDKI 120
            + +  +E+ Y                                + +D      SLPVDKI
Sbjct: 514 VDEKDRSEEYY------------------SDIDDDFDDECSDDESLDPVGPVGSLPVDKI 555

Query: 121 VNKLKPR 127
           V KL+ R
Sbjct: 556 VRKLRER 562