Miyakogusa Predicted Gene

Lj0g3v0334409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334409.1 tr|B9I3A8|B9I3A8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_570097 PE=4
SV=1,38.75,9e-18,seg,NULL,CUFF.22837.1
         (433 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48190.1 | Symbols: ATM, ATATM | ataxia-telangiectasia mutate...    77   3e-14
AT3G27860.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein | c...    57   3e-08
AT5G02950.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein | c...    53   5e-07

>AT3G48190.1 | Symbols: ATM, ATATM | ataxia-telangiectasia mutated |
           chr3:17797628-17828361 FORWARD LENGTH=3845
          Length = 3845

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 71/142 (50%), Gaps = 18/142 (12%)

Query: 288 HTKNVTELPDLNGICTESDLIRKEVETVNVLTPGFRPGKSRSLSGCSRPSNTDRVVETNG 347
           H    T +PDLNG  TE  L+  +VE          P + R            +    NG
Sbjct: 642 HASATTGIPDLNGTNTEPTLVLPQVE----------PTQRRR--------RRKKEESPNG 683

Query: 348 ESQPGTFLHLQFSPGAYIPSKDELLTAFYQFGPLKASESQLFKGTGVAQIVFVRSTDAGE 407
            ++  T L L+FS    +PS+D+L + F  FGPL +SE+ + +    AQ+ FV S DA E
Sbjct: 684 LTRGITILFLKFSSQVSMPSRDDLTSTFSAFGPLDSSETHVSEEFSGAQVAFVSSADAIE 743

Query: 408 AFHSLEKNKPFGTALVDYKLHH 429
           A  SLEK  PFG  LV+++L  
Sbjct: 744 AVKSLEKANPFGETLVNFRLQQ 765



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MSSSPEFINASPKELLSELHSKAVDCMFPTENKSFELVEWFFSRYRISTYHDEAELATSL 60
           +S+  + +N  P +L+S+L   AV      E ++  L EWFFS++RIS YHDE      L
Sbjct: 325 VSARDDLVNVPPSDLISKLKLLAVGYNCSEETENIGLFEWFFSKFRISVYHDENAYKMQL 384

Query: 61  VDEKGGK-----TGKRVGSNLLDIKSGKRKNNKME 90
            +  G K     T    G+    +KS K   +KME
Sbjct: 385 ANMAGFKDLMLATNANRGTVQKTLKSKKIGKSKME 419


>AT3G27860.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein |
           chr3:10326128-10328086 FORWARD LENGTH=652
          Length = 652

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 349 SQPGTFLHLQFSPGAYIPSKDELLTAFYQFGPLKASESQLFKGTGVAQIVFVRSTDAGEA 408
           ++PG  L+++   G+ +PSKD+L+  + +FG L    S +F     + + FV ++D  EA
Sbjct: 506 NEPGVELYIKTGFGSTLPSKDDLIKTYEKFGALDKERSYMFNNNSCSCVAFVNASDGEEA 565

Query: 409 FH-SLEKNKPFG-TALVDYKLHHLPAA 433
           F+ SLEK  PF  T+ V +KL +  +A
Sbjct: 566 FNRSLEKC-PFATTSTVTFKLEYPSSA 591


>AT5G02950.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein |
           chr5:690953-692851 FORWARD LENGTH=632
          Length = 632

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query: 344 ETNGESQPGTFLHLQFSPGAYIPSKDELLTAFYQFGPLKASESQLFKGTGVAQIVFVRST 403
           + + +S P   L L F+    +PS+++L   F ++GPL  S++++      A++VF R  
Sbjct: 538 DCSADSLPPYALVLNFADSGSVPSEEKLNEIFKRYGPLHESKTKVTMKGKRAKVVFKRGE 597

Query: 404 DAGEAFHSLEKNKPFGTALVDYKLHHL 430
           DA  AF S  K   FG +L+ Y+L ++
Sbjct: 598 DAKTAFSSAGKYSIFGPSLLSYRLEYV 624