Miyakogusa Predicted Gene

Lj0g3v0334309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334309.1 Non Chatacterized Hit- tr|E0CNX1|E0CNX1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,29.61,0.000000000000001,seg,NULL,CUFF.22836.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49510.1 | Symbols: emb1273 | embryo defective 1273 | chr1:18...   227   4e-60

>AT1G49510.1 | Symbols: emb1273 | embryo defective 1273 |
           chr1:18327026-18328147 FORWARD LENGTH=240
          Length = 240

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 127/165 (76%)

Query: 66  SAHQSDDHRKMKLEELLDKARTLWDTSPEPVKNFPWNRALDNFIQLILDLTLAVVKYLSV 125
           S H  +  +K+  + LL + + +WD SP+PVK FPWNRA  NFIQL+LDL ++VVK+L V
Sbjct: 61  SGHSGEQPKKLNFDNLLRRTKHVWDNSPQPVKEFPWNRAFGNFIQLVLDLAISVVKFLFV 120

Query: 126 PLFAVTSISELSYCAHERKXXXXXXXXXFGVAIAGILKETALDLSPRLRDAEVPWHLIAV 185
           P+ AV+SISE+SYCAHERK          G+ +AG+L+ETAL +SPRL++AEVPWHLIA+
Sbjct: 121 PILAVSSISEMSYCAHERKLALVPFPLVIGMVVAGVLQETALKISPRLKEAEVPWHLIAM 180

Query: 186 AIFFTMIKLPGPYYPYWGRIFIPHFANGVLLRTLWFAILWYRRPK 230
            +FFT+IKLPGPYYPYWGR+ +PHFANGVLLR LW    WY++ +
Sbjct: 181 MMFFTLIKLPGPYYPYWGRLLVPHFANGVLLRALWSMFFWYKKTR 225