Miyakogusa Predicted Gene

Lj0g3v0334259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334259.1 tr|C1FHQ2|C1FHQ2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_62160
,36.21,1e-18,no description,ssDNA-binding transcriptional regulator;
seg,NULL; ssDNA-binding transcriptional regu,CUFF.22818.1
         (260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding trans...   329   1e-90
AT2G02740.2 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tran...   310   4e-85
AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tran...   307   4e-84
AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861849-2...   176   2e-44

>AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding
           transcriptional regulator | chr1:4929352-4930810 REVERSE
           LENGTH=263
          Length = 263

 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 152/219 (69%), Positives = 183/219 (83%), Gaps = 9/219 (4%)

Query: 44  IRCRHSDLFDQKTF--SSSTPQPANPAAVSVGALPPRVYVGHSIYKGKAALTVTPRPPEF 101
           ++ R +D F+++ F  SSS+P PA         LP R YVGHSIYKGKAALTV PR PEF
Sbjct: 51  VKSRQTDYFEKQRFGDSSSSPSPAE-------GLPARFYVGHSIYKGKAALTVDPRAPEF 103

Query: 102 APLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRESCEFFH 161
             LDSGAFK+S++G++LLQFAP+   RQYDW++KQVFSLSV E+G+++SLG RESCEFFH
Sbjct: 104 VALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFH 163

Query: 162 DPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELAVLSSIF 221
           DP KGKSDEGKVRKVLK+EPLPDGSGHFFNLSVQNK+VN+DE+IYIP+T+AE AVL S F
Sbjct: 164 DPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAF 223

Query: 222 NFIMPYLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWN 260
           NF++PYL+GWH FANS+ PE +S VNNA+P YGGDYEWN
Sbjct: 224 NFVLPYLIGWHAFANSIKPEETSRVNNASPNYGGDYEWN 262


>AT2G02740.2 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding
           transcriptional regulator | chr2:769389-770993 FORWARD
           LENGTH=267
          Length = 267

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 146/225 (64%), Positives = 183/225 (81%), Gaps = 7/225 (3%)

Query: 37  PSKPLTL-IRCRHSDLFDQKTFSSSTPQPANPAAVSVGALPPRVYVGHSIYKGKAALTVT 95
           P+  L L ++ R SD F+++ F  S+   +  A VS     PR YVGHSIYKGKAALT+ 
Sbjct: 48  PTARLKLTVKSRQSDYFEKQRFGDSSS--SQNAEVS----SPRFYVGHSIYKGKAALTIE 101

Query: 96  PRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRE 155
           PR PEF  L+SGAFK+++EG++LLQFAPA   RQYDW+RKQVFSLSV E+G+++SLG RE
Sbjct: 102 PRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRE 161

Query: 156 SCEFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELA 215
           SCEFFHDP KGK DEGKVRKVLK+EPLPDGSG FFNLSVQNK++N+DE++YIP+TKAE A
Sbjct: 162 SCEFFHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFA 221

Query: 216 VLSSIFNFIMPYLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWN 260
           VL S FNF++P+L+GW  FANS+ PE S+ +NNA+P+YGGDYEW+
Sbjct: 222 VLISAFNFVLPHLIGWSAFANSIKPEDSNRLNNASPKYGGDYEWS 266


>AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding
           transcriptional regulator | chr2:769389-770993 FORWARD
           LENGTH=268
          Length = 268

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 147/226 (65%), Positives = 184/226 (81%), Gaps = 8/226 (3%)

Query: 37  PSKPLTL-IRCRHSDLFDQKTFSSSTPQPANPAAVSVGALPPRVYVGHSIYKGKAALTVT 95
           P+  L L ++ R SD F+++ F  S+   +  A VS     PR YVGHSIYKGKAALT+ 
Sbjct: 48  PTARLKLTVKSRQSDYFEKQRFGDSSS--SQNAEVS----SPRFYVGHSIYKGKAALTIE 101

Query: 96  PRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRE 155
           PR PEF  L+SGAFK+++EG++LLQFAPA   RQYDW+RKQVFSLSV E+G+++SLG RE
Sbjct: 102 PRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRE 161

Query: 156 SCEFFHDPLKGK-SDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAEL 214
           SCEFFHDP KGK SDEGKVRKVLK+EPLPDGSG FFNLSVQNK++N+DE++YIP+TKAE 
Sbjct: 162 SCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEF 221

Query: 215 AVLSSIFNFIMPYLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWN 260
           AVL S FNF++P+L+GW  FANS+ PE S+ +NNA+P+YGGDYEW+
Sbjct: 222 AVLISAFNFVLPHLIGWSAFANSIKPEDSNRLNNASPKYGGDYEWS 267


>AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 |
           chr1:26861849-26863391 REVERSE LENGTH=238
          Length = 238

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 131/207 (63%), Gaps = 9/207 (4%)

Query: 59  SSTPQ---PANPAAVSVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKISREG 115
           SSTP    P   AA   G    R++  +SI+KGKAAL+V P  P F  +DSG  +I R G
Sbjct: 35  SSTPGRGFPGKDAAKPSG----RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRG 90

Query: 116 YVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRESCEFFHDPLKGKSDEGKVRK 175
            +++ F PAI  R+YDW +KQ F+LS  E+GS+IS+G+++S EFFHDP    S+ G+VRK
Sbjct: 91  SLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRK 150

Query: 176 VLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELAVLSSIFNFIMPYLLGWHTFA 235
            L ++P  DGSG+F +LSV N I+  ++   +PVTKAE AV+ + F+F +P+++GW+   
Sbjct: 151 SLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLT 210

Query: 236 NSVNPEY--SSGVNNANPRYGGDYEWN 260
             VN E   S  V++       + EW+
Sbjct: 211 GHVNTEALPSRNVSHLKTEPQLELEWD 237