Miyakogusa Predicted Gene

Lj0g3v0334199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334199.1 Non Chatacterized Hit- tr|B9RLX3|B9RLX3_RICCO
Mads box protein, putative OS=Ricinus communis
GN=RCOM,32.32,5e-17,seg,NULL,CUFF.22806.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03060.2 | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901614-903...    61   3e-10
AT2G03060.1 | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901614-903...    59   1e-09

>AT2G03060.2 | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901614-903569
           FORWARD LENGTH=386
          Length = 386

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 26/195 (13%)

Query: 1   MSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGRHASNLGSSS 60
           M +  ++ ++Q LQ +SWI N ++ NIV  E+ N    ++VE SASSSFG +    G+  
Sbjct: 194 MQDGIQIPLEQQLQSMSWILNSNTTNIV-TEEHNSIPQREVECSASSSFGSYPGYFGTGK 252

Query: 61  KLEISTSGQENCVLIDMSSTAPLRLQLSGQIXXXXXXXXXXXXXKLQ------------- 107
             E++  GQE   L D  +T  L+   S Q               L              
Sbjct: 253 SPEMTIPGQETSFL-DELNTGQLKQDTSSQQQFTNNNNITAYNPNLHNDMNHHQTLPPPP 311

Query: 108 ----PTAAEINPHKNPVDYHVDGSFEDPRP---GYDSN----QHGWASTSGPCAVTMFDE 156
                  A++    N  +YH++G FE P P    Y+ N    + G +S+S PC+++MFDE
Sbjct: 312 LPLTLPHAQVYIPMNQREYHMNGFFEAPPPDSSAYNDNTNQTRFGSSSSSLPCSISMFDE 371

Query: 157 HLYAQASFNKVHFGF 171
           +L++Q +  K+   F
Sbjct: 372 YLFSQVTKTKLSQRF 386


>AT2G03060.1 | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901614-903639
           FORWARD LENGTH=332
          Length = 332

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 26/185 (14%)

Query: 1   MSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGRHASNLGSSS 60
           M +  ++ ++Q LQ +SWI N ++ NIV  E+ N    ++VE SASSSFG +    G+  
Sbjct: 145 MQDGIQIPLEQQLQSMSWILNSNTTNIV-TEEHNSIPQREVECSASSSFGSYPGYFGTGK 203

Query: 61  KLEISTSGQENCVLIDMSSTAPLRLQLSGQIXXXXXXXXXXXXXKLQ------------- 107
             E++  GQE   L D  +T  L+   S Q               L              
Sbjct: 204 SPEMTIPGQETSFL-DELNTGQLKQDTSSQQQFTNNNNITAYNPNLHNDMNHHQTLPPPP 262

Query: 108 ----PTAAEINPHKNPVDYHVDGSFEDPRP---GYDSN----QHGWASTSGPCAVTMFDE 156
                  A++    N  +YH++G FE P P    Y+ N    + G +S+S PC+++MFDE
Sbjct: 263 LPLTLPHAQVYIPMNQREYHMNGFFEAPPPDSSAYNDNTNQTRFGSSSSSLPCSISMFDE 322

Query: 157 HLYAQ 161
           +L++Q
Sbjct: 323 YLFSQ 327