Miyakogusa Predicted Gene

Lj0g3v0333249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0333249.1 Non Chatacterized Hit- tr|D8U6A7|D8U6A7_VOLCA
Putative uncharacterized protein OS=Volvox carteri GN=,55.26,3e-18,
,CUFF.22729.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64816.2 | Symbols:  | unknown protein; Has 35333 Blast hits ...   216   4e-57
AT5G64816.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   216   4e-57

>AT5G64816.2 | Symbols:  | unknown protein; Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:25913487-25913879 FORWARD LENGTH=130
          Length = 130

 Score =  216 bits (549), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 113/120 (94%)

Query: 1   MGDIWWSLLGAAIPVVVAGQAFRVKKRRAEEQRLTSARGRERSSDEIFVCERVCTSKRML 60
           M ++WWSL+GAA+P ++AGQA+R+KKR  EE+R+ SARGRE+SSDEIFVCERVCTSKRML
Sbjct: 1   MVEVWWSLIGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGVSDLDACADACARTVCVNHHQVPNWNDICLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCGVS+LDAC+DACARTVCVN HQV NWNDICLRRCQSECLKL
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120


>AT5G64816.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:25913487-25913879 FORWARD LENGTH=130
          Length = 130

 Score =  216 bits (549), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 113/120 (94%)

Query: 1   MGDIWWSLLGAAIPVVVAGQAFRVKKRRAEEQRLTSARGRERSSDEIFVCERVCTSKRML 60
           M ++WWSL+GAA+P ++AGQA+R+KKR  EE+R+ SARGRE+SSDEIFVCERVCTSKRML
Sbjct: 1   MVEVWWSLIGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGVSDLDACADACARTVCVNHHQVPNWNDICLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCGVS+LDAC+DACARTVCVN HQV NWNDICLRRCQSECLKL
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120