Miyakogusa Predicted Gene

Lj0g3v0333209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0333209.1 tr|A9SIE8|A9SIE8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_130366,65,0.000000000001,RNA recognition motif,RNA
recognition motif domain; PUTATIVE UNCHARACTERIZED PROTEIN,NULL;
HETEROGEN,CUFF.22728.1
         (171 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-bindi...   306   4e-84
AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract-...   263   5e-71
AT3G01150.2 | Symbols: PTB | polypyrimidine tract-binding protei...   194   2e-50
AT1G43190.2 | Symbols: PTB3 | polypyrimidine tract-binding prote...   104   3e-23
AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding prote...   104   3e-23
AT1G43190.3 | Symbols: PTB3 | polypyrimidine tract-binding prote...    97   5e-21
AT5G53180.2 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-bindi...    74   4e-14

>AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding
           protein 2 | chr5:21568393-21571537 REVERSE LENGTH=429
          Length = 429

 Score =  306 bits (785), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 148/171 (86%), Positives = 153/171 (89%)

Query: 1   MASVSTQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
           M+SVS+QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFG VVNTKCNVGANRNQAFI
Sbjct: 1   MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFI 60

Query: 61  EFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGT 120
           EF DLNQ            EPAQVRGKTVYLQYSNRQEIVNNKT ADV GNVLLVTIEG 
Sbjct: 61  EFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGD 120

Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
           DAR+VSIDVLHLVFSAFGFVHKITTFEKTAG+QALVQF+DAETATAAK AL
Sbjct: 121 DARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLAL 171



 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDA 170
           NVLL +IE      V++DVLH+VF+AFG V KI  F+K  G QAL+Q+SD +TA  AK+A
Sbjct: 244 NVLLASIENMQ-YAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEA 302

Query: 171 L 171
           L
Sbjct: 303 L 303


>AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine
           tract-binding protein 1 | chr3:51732-54344 FORWARD
           LENGTH=399
          Length = 399

 Score =  263 bits (672), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 124/169 (73%), Positives = 138/169 (81%)

Query: 3   SVSTQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
           S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2   SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61

Query: 63  ADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGTDA 122
           ADLNQ            EPAQ+RGKTVY+QYSNR EIVNN++  DVPGNVLLVT EG ++
Sbjct: 62  ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121

Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
             VSIDV+HLVFSAFGFVHKI TFEK AGFQALVQF+D ETA+AA+ AL
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSAL 170



 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDA 170
           NVLL  IE      V++DVLH VFSA+G V KI  FEK    QAL+Q+SD  TA  AK+A
Sbjct: 243 NVLLGLIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 301

Query: 171 L 171
           L
Sbjct: 302 L 302


>AT3G01150.2 | Symbols: PTB | polypyrimidine tract-binding protein 1
           | chr3:51732-54344 FORWARD LENGTH=370
          Length = 370

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 112/169 (66%), Gaps = 29/169 (17%)

Query: 3   SVSTQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
           S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2   SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61

Query: 63  ADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGTDA 122
           ADLNQ            EPAQ+RGKTVY+QYSNR EIVNN++  DVPGNVLLVT EG ++
Sbjct: 62  ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121

Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
                                         +ALVQF+D ETA+AA+ AL
Sbjct: 122 H-----------------------------EALVQFTDVETASAARSAL 141



 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDA 170
           NVLL  IE      V++DVLH VFSA+G V KI  FEK    QAL+Q+SD  TA  AK+A
Sbjct: 214 NVLLGLIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 272

Query: 171 L 171
           L
Sbjct: 273 L 273


>AT1G43190.2 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=432
          Length = 432

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 9/159 (5%)

Query: 17  SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXX 76
           SKV+H+RN+  E +E +L++L +PFG +  TK  +   +NQA ++  D++          
Sbjct: 5   SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVS-SAVSALQFF 61

Query: 77  XXXEPAQVRGKTVYLQYSNRQEIV----NNKTAADVPGNVLLVTIEGTDARLVSIDVLHL 132
              +P  +RG+ VY+Q+S+ QE+     N     D P  +LLVTI       +++DVLH 
Sbjct: 62  TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119

Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
           VFS +GFV K+ TF+K+AGFQAL+Q+   + A +A+ AL
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTAL 158


>AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=432
          Length = 432

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 9/159 (5%)

Query: 17  SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXX 76
           SKV+H+RN+  E +E +L++L +PFG +  TK  +   +NQA ++  D++          
Sbjct: 5   SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVS-SAVSALQFF 61

Query: 77  XXXEPAQVRGKTVYLQYSNRQEIV----NNKTAADVPGNVLLVTIEGTDARLVSIDVLHL 132
              +P  +RG+ VY+Q+S+ QE+     N     D P  +LLVTI       +++DVLH 
Sbjct: 62  TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119

Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
           VFS +GFV K+ TF+K+AGFQAL+Q+   + A +A+ AL
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTAL 158


>AT1G43190.3 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=430
          Length = 430

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 92/159 (57%), Gaps = 11/159 (6%)

Query: 17  SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXX 76
           SKV+H+RN+  E +E +L++L +PFG +  TK  +   +NQA ++  D++          
Sbjct: 5   SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFFT 62

Query: 77  XXXEPAQVRGKTVYLQYSNRQEIV----NNKTAADVPGNVLLVTIEGTDARLVSIDVLHL 132
                 Q   + VY+Q+S+ QE+     N     D P  +LLVTI       +++DVLH 
Sbjct: 63  N----VQPTIRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 117

Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
           VFS +GFV K+ TF+K+AGFQAL+Q+   + A +A+ AL
Sbjct: 118 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTAL 156


>AT5G53180.2 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding
           protein 2 | chr5:21568393-21571081 REVERSE LENGTH=329
          Length = 329

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 38/39 (97%)

Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDAL 171
           VFSAFGFVHKITTFEKTAG+QALVQF+DAETATAAK AL
Sbjct: 33  VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLAL 71



 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDA 170
           NVLL +IE      V++DVLH+VF+AFG V KI  F+K  G QAL+Q+SD +TA  AK+A
Sbjct: 144 NVLLASIENMQ-YAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEA 202

Query: 171 L 171
           L
Sbjct: 203 L 203