Miyakogusa Predicted Gene

Lj0g3v0333099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0333099.1 Non Chatacterized Hit- tr|I3T6H9|I3T6H9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,The
RING-variant domain is a C4HC3 zinc-fing,Zinc finger, RING-CH-type;
RING/U-box,NULL; seg,NULL; n,CUFF.22846.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11020.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   201   2e-52
AT2G22120.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   138   1e-33
AT2G22120.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   137   2e-33
AT1G50440.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   122   8e-29
AT1G50440.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   122   8e-29
AT1G50440.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   122   8e-29
AT4G32670.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    54   4e-08
AT4G34100.2 | Symbols:  | RING/U-box superfamily protein | chr4:...    50   6e-07
AT4G34100.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    50   6e-07

>AT1G11020.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:3676968-3678350 FORWARD LENGTH=321
          Length = 321

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 121/168 (72%), Gaps = 15/168 (8%)

Query: 1   MKGEVQLQPP---------PIMQNXXXXXXXXXXXXXXXXXXXXAEIKDEEDVE--AGSL 49
           M+GEVQLQPP         P++ +                     EIK EED+E  A S 
Sbjct: 2   MQGEVQLQPPDSQKLSDSAPLLGDHTNSSSASPSAASVVAGNSD-EIKAEEDLENDASSA 60

Query: 50  PCCRICLESDSDP-EDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHL 108
           PCCRICLE DS+   DELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHL
Sbjct: 61  PCCRICLEDDSELLGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHL 120

Query: 109 RVESYED-NSW-RKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDK 154
           RVE +ED NSW RK KFRLFVARDV LVF+AVQTVIA + GFAY+MDK
Sbjct: 121 RVEPFEDNNSWRRKAKFRLFVARDVLLVFLAVQTVIAVMAGFAYMMDK 168


>AT2G22120.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:9394026-9396979 FORWARD LENGTH=363
          Length = 363

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 83/119 (69%), Gaps = 8/119 (6%)

Query: 40  DEEDVEAGSLPC----CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFA 95
            E D+EAG  P     CRICLE+D     + I+PC CKGT ++VHR CLDHWR++KEGFA
Sbjct: 20  SEIDLEAGG-PGEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRDCLDHWRAIKEGFA 75

Query: 96  FSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDK 154
           F+HCTTCKA ++LRV S  D  WR +KFR FV RD+  +F+AVQ VIAA+    Y +D 
Sbjct: 76  FAHCTTCKAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFIDS 134


>AT2G22120.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:9394026-9396768 FORWARD LENGTH=324
          Length = 324

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 83/119 (69%), Gaps = 8/119 (6%)

Query: 40  DEEDVEAGSLPC----CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFA 95
            E D+EAG  P     CRICLE+D     + I+PC CKGT ++VHR CLDHWR++KEGFA
Sbjct: 20  SEIDLEAGG-PGEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRDCLDHWRAIKEGFA 75

Query: 96  FSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDK 154
           F+HCTTCKA ++LRV S  D  WR +KFR FV RD+  +F+AVQ VIAA+    Y +D 
Sbjct: 76  FAHCTTCKAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFIDS 134


>AT1G50440.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 5/117 (4%)

Query: 36  AEIKDEED--VEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEG 93
           AE  D+E   + +G  P CRICL  D   ED LI+PC CKGTQ+ VHRSCLD+WRS KEG
Sbjct: 46  AETDDDETTLLVSGDQPQCRICL--DVGGED-LIAPCNCKGTQKHVHRSCLDNWRSTKEG 102

Query: 94  FAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAY 150
           FAFSHCT C+A F LR     D  W +++F+L VARD   +F++VQ ++A +G   Y
Sbjct: 103 FAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVY 159


>AT1G50440.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 5/117 (4%)

Query: 36  AEIKDEED--VEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEG 93
           AE  D+E   + +G  P CRICL  D   ED LI+PC CKGTQ+ VHRSCLD+WRS KEG
Sbjct: 46  AETDDDETTLLVSGDQPQCRICL--DVGGED-LIAPCNCKGTQKHVHRSCLDNWRSTKEG 102

Query: 94  FAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAY 150
           FAFSHCT C+A F LR     D  W +++F+L VARD   +F++VQ ++A +G   Y
Sbjct: 103 FAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVY 159


>AT1G50440.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 5/117 (4%)

Query: 36  AEIKDEED--VEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEG 93
           AE  D+E   + +G  P CRICL  D   ED LI+PC CKGTQ+ VHRSCLD+WRS KEG
Sbjct: 46  AETDDDETTLLVSGDQPQCRICL--DVGGED-LIAPCNCKGTQKHVHRSCLDNWRSTKEG 102

Query: 94  FAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAY 150
           FAFSHCT C+A F LR     D  W +++F+L VARD   +F++VQ ++A +G   Y
Sbjct: 103 FAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVY 159


>AT4G32670.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr4:15759527-15762847 REVERSE LENGTH=860
          Length = 860

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 43  DVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTC 102
           D+   ++  CRIC +S  +P++ L  PC C+G+ +++H  CL  W + ++    +HC  C
Sbjct: 24  DINNKAVDICRIC-QSPEEPDNPLRHPCACRGSLKYIHSDCLFLWLNRRKR---NHCEIC 79

Query: 103 KAQFHLRVESYEDNSWRKIKFRLFV 127
           K  + + V  Y +N+  ++ +  F+
Sbjct: 80  KRSYSI-VPVYSENAPERLPWHEFL 103


>AT4G34100.2 | Symbols:  | RING/U-box superfamily protein |
           chr4:16330590-16334864 FORWARD LENGTH=1107
          Length = 1107

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRIC  +  D ++ L  PC C G+ +FVH+ CL  W +         C  CK  F     
Sbjct: 68  CRIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFS-P 122

Query: 112 SYEDNSWRKIKFRLFV 127
            Y DN+  ++ F+ FV
Sbjct: 123 VYADNAPSRLPFQEFV 138


>AT4G34100.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:16330590-16334864 FORWARD LENGTH=1108
          Length = 1108

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRIC  +  D ++ L  PC C G+ +FVH+ CL  W +         C  CK  F     
Sbjct: 68  CRIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFS-P 122

Query: 112 SYEDNSWRKIKFRLFV 127
            Y DN+  ++ F+ FV
Sbjct: 123 VYADNAPSRLPFQEFV 138