Miyakogusa Predicted Gene

Lj0g3v0332899.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332899.1 Non Chatacterized Hit- tr|B9STZ0|B9STZ0_RICCO
Cell differentiation protein rcd1, putative
OS=Ricinus,85.27,0,Rcd1,Cell differentiation, Rcd1-like; SUBFAMILY NOT
NAMED,NULL; UNCHARACTERIZED,Cell differentiation,CUFF.22724.1
         (331 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20800.1 | Symbols:  | Cell differentiation, Rcd1-like protei...   516   e-146
AT5G12980.1 | Symbols:  | Cell differentiation, Rcd1-like protei...   467   e-132
AT2G32550.1 | Symbols:  | Cell differentiation, Rcd1-like protei...   147   1e-35

>AT3G20800.1 | Symbols:  | Cell differentiation, Rcd1-like protein |
           chr3:7271412-7273897 REVERSE LENGTH=316
          Length = 316

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/316 (80%), Positives = 271/316 (85%), Gaps = 3/316 (0%)

Query: 17  MANLSQAFXXXXXXXXXXXXXXXXXXSSSNK---MAGAEQLVLELSNPDLRENALLELSK 73
           MANL  +                   + +NK   +A AEQLVL+LSNP+LRENALLELSK
Sbjct: 1   MANLPSSLSMGTPFGGPSTSAQNPTGAPANKDRNLASAEQLVLDLSNPELRENALLELSK 60

Query: 74  KRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPTLTPAQSNRVCNALALLQCVASHP 133
           KRELFQDLAPLLWNSFGTIAALLQEIVSIY VL+PP LTPAQSNRVCN+LALLQCVASH 
Sbjct: 61  KRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCVASHS 120

Query: 134 DTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEII 193
           DTRM FL AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEII
Sbjct: 121 DTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEII 180

Query: 194 PLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVGALAEQQ 253
           PLCLRTMEMGSELSKTVATFIVQKILLDDVG+DYICTTAERFFAVGRVLGNMV +L EQ 
Sbjct: 181 PLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQSLVEQP 240

Query: 254 STRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDTTTRRWLQQLLHNVG 313
           S RLLKHIIRCYLRLSDNPRAC AL SCLPD LRD +FS+CLRED T RRWLQQL+HNVG
Sbjct: 241 SPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARRWLQQLVHNVG 300

Query: 314 SGRVPAMQAGGFDHIM 329
            GRVP  Q GGF+H++
Sbjct: 301 VGRVPTHQGGGFEHML 316


>AT5G12980.1 | Symbols:  | Cell differentiation, Rcd1-like protein |
           chr5:4105562-4108139 REVERSE LENGTH=311
          Length = 311

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/290 (78%), Positives = 253/290 (87%), Gaps = 5/290 (1%)

Query: 43  SSSNKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSI 102
           ++  K++ AEQL+L+LSNP+LRENAL ELSKKRE+FQDLAPLLW+S GTI ALLQEI+++
Sbjct: 26  NNDRKLSSAEQLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALLQEIIAV 85

Query: 103 YPVLSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFE 162
           YP LSPPT+TPAQSNRVCNALALLQCVASH DTRM FL AH+PLYLY FLNT+SKSRPFE
Sbjct: 86  YPALSPPTMTPAQSNRVCNALALLQCVASHTDTRMLFLKAHLPLYLYAFLNTSSKSRPFE 145

Query: 163 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDD 222
           YLRLTSLGVIGALVKVDDTEVI FLL TEI+PLCLRTME GSELSKTVATFIVQK+LLDD
Sbjct: 146 YLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCLRTMENGSELSKTVATFIVQKVLLDD 205

Query: 223 VGLDYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRACDALRSCL 282
           VGL+Y+CTTAERFFA+GRVLGNMV +LAE  S RLLKHIIRCYLRL+DNPRACDAL SCL
Sbjct: 206 VGLEYMCTTAERFFALGRVLGNMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCL 265

Query: 283 PDMLRDATFSSCLREDTTTRRWLQQLLHNVG-SGRVPAMQAGGFDHIMVN 331
           PD+LRDATFS CL +D    +WLQQLLHNV   GR P     G  H+ VN
Sbjct: 266 PDLLRDATFSGCLYDDPPAMQWLQQLLHNVNVGGRAPQ----GLAHMFVN 311


>AT2G32550.1 | Symbols:  | Cell differentiation, Rcd1-like protein |
           chr2:13819406-13822600 FORWARD LENGTH=322
          Length = 322

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 142/275 (51%), Gaps = 16/275 (5%)

Query: 53  QLVLELSNPD--LRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLS--- 107
           Q V ++  P   + + AL  L+  R  F+ L  LLW S  T+  +LQE+   Y  L+   
Sbjct: 51  QWVCDIHKPKSYMSDFALHNLAYHRNDFEFLPSLLWESKNTVYIMLQEVFEAYRHLAGHI 110

Query: 108 -----PPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFE 162
                P  L P    RV N   L Q +A HPDT  QFL A +P Y YP ++T    +  E
Sbjct: 111 SLRLFPHPLNPL---RVYNVFLLFQSMACHPDTSRQFLRAKMPNYFYPLMDTGLIDKSDE 167

Query: 163 YLRLTSLGVIGALVKV-DDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLD 221
            +RL +LGVI  ++K  +D  V  +L+ + ++  C++ +E GS  +K VA +I+ KI+  
Sbjct: 168 CMRLAALGVIAHMLKASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMST 227

Query: 222 DVGLDYICTTAERFFAVGRVLGNMVGALAE--QQSTRLLKHIIRCYLRLSDNPRACDALR 279
           D GL Y C  A+RF+ +  +L  ++  L+   +  + L   +  CY++LS N RA + +R
Sbjct: 228 DQGLYYCCVLADRFYVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRARNGIR 287

Query: 280 SCLPDMLRDATFSSCLREDTTTRRWLQQLLHNVGS 314
              P +L D TFS    ED        QLL N+ +
Sbjct: 288 RYTPFLLFDGTFSRLYAEDPVAANNRIQLLQNLDN 322