Miyakogusa Predicted Gene

Lj0g3v0332649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332649.1 tr|Q6YSR3|Q6YSR3_BRANA Maturase-related protein
(Fragment) OS=Brassica napus GN=matR PE=4 SV=1,96.67,0.00000001,
,CUFF.22688.1
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00520.1 | Symbols: MATR | Intron maturase, type II family pr...    64   2e-11

>ATMG00520.1 | Symbols: MATR | Intron maturase, type II family
           protein | chrM:144294-146312 REVERSE LENGTH=672
          Length = 672

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 38  SAGSTTIAARSTVEFLGTVIREVPPRTTPV 67
           SAGSTTIAARSTVEFLGTVIREVPPRTTP+
Sbjct: 357 SAGSTTIAARSTVEFLGTVIREVPPRTTPI 386