Miyakogusa Predicted Gene

Lj0g3v0332399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332399.1 tr|B9MTJ8|B9MTJ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_589523 PE=4
SV=1,58.23,4e-17,coiled-coil,NULL; seg,NULL,CUFF.22664.1
         (247 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51200.1 | Symbols:  | Protein of unknown function (DUF3414) ...   177   8e-45

>AT5G51200.1 | Symbols:  | Protein of unknown function (DUF3414) |
            chr5:20804926-20819408 FORWARD LENGTH=1838
          Length = 1838

 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 132/220 (60%), Gaps = 7/220 (3%)

Query: 27   RNSELQIFNLCXXXXXXXXXXVTKKSLRLQAXXXXXXYPTSIELQQPXXXXXXXXXXXXX 86
            + SEL++  L           VTK SLRLQ         +S +L+QP             
Sbjct: 1626 QGSELKLSQLRFSLTSYLYFLVTKNSLRLQVSDDSLD--SSTKLRQPTLLLLASLLSHVT 1683

Query: 87   XXXERAAEEKSLLLNKIRDINELSRQEVDEIINMCVRQESLSSADNIQKRRYIAMVEMCR 146
               ERAAE+KSLLL+KIRDINELSRQ+VD II +C  QE ++ +DNI KRRYIAMVEMC+
Sbjct: 1684 DSLERAAEKKSLLLHKIRDINELSRQDVDAIIKICDSQEYVTPSDNIHKRRYIAMVEMCQ 1743

Query: 147  VVASRDRXXXXXXXXXXXXXXXXXIHLQNSSIALDPAMSTKTITYSSKCDPQQDMALFCG 206
            +V +RD+                 IHLQ+ S++     S +  +Y SK   QQ++   CG
Sbjct: 1744 IVGNRDQLITLLLQLAEHVLNIILIHLQDRSVS-----SNERGSYGSKSHIQQEVTDLCG 1798

Query: 207  KLVPTLERLELLSEEKIGHNLKVFQRLTTSAKEIAIQKLI 246
            KL PT++RL LL+E K+GHNLKVFQRL T+ KE+AIQK +
Sbjct: 1799 KLSPTIDRLALLNEGKVGHNLKVFQRLATTVKEMAIQKCV 1838