Miyakogusa Predicted Gene

Lj0g3v0332299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332299.1 Non Chatacterized Hit- tr|D8S8I5|D8S8I5_SELML
Putative uncharacterized protein OS=Selaginella
moelle,44.44,0.000000000000005,OS02G0126500 PROTEIN,NULL; FAMILY NOT
NAMED,NULL,CUFF.22656.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   153   3e-38

>AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:16983638-16986681 FORWARD
           LENGTH=444
          Length = 444

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 83/100 (83%)

Query: 1   MNGYTEKGMQIAQDTLVTMNERQFFLNSKYGSELLLIAAGEKTGGYTTANYIWDLMRARN 60
           M GYT+ GM+IAQDTL+ MNER FFL+ + GS LLL AAGEKTGGYT AN IWDLM ARN
Sbjct: 337 MTGYTDNGMKIAQDTLIQMNERNFFLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARN 396

Query: 61  IVPAFAAVERYYQGLKDREIPQDDPRLVLVCRTLDNFRMR 100
           I+P  AAVE YY+GLK+REIP+DDPRL+LV RT +N R+R
Sbjct: 397 ILPTLAAVEAYYKGLKEREIPEDDPRLMLVTRTYNNLRLR 436