Miyakogusa Predicted Gene

Lj0g3v0332239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332239.1 Non Chatacterized Hit- tr|B6UGI9|B6UGI9_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,56.82,2e-19,seg,NULL; Ypt/Rab-GAP domain of gyp1p,Rab-GTPase-TBC
domain; no description,NULL; TBC1 DOMAIN FAMILY,CUFF.22646.1
         (148 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13730.2 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamil...   115   8e-27
AT4G13730.1 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamil...   115   8e-27
AT4G13730.3 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamil...   115   9e-27
AT1G04830.2 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamil...   108   1e-24
AT1G04830.1 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamil...   108   1e-24

>AT4G13730.2 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamily
           protein | chr4:7970299-7973901 FORWARD LENGTH=408
          Length = 408

 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 66/72 (91%)

Query: 75  AQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQ 134
           AQ++AELS+KVID++ELR++ASQG+PD +G+RS VWKLLL YL  DR+LWSSELAKKRSQ
Sbjct: 101 AQVVAELSKKVIDLKELRKIASQGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQ 160

Query: 135 YKHFKDDLLMNP 146
           YK FK++LLMNP
Sbjct: 161 YKQFKEELLMNP 172


>AT4G13730.1 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamily
           protein | chr4:7970299-7974055 FORWARD LENGTH=449
          Length = 449

 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 66/72 (91%)

Query: 75  AQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQ 134
           AQ++AELS+KVID++ELR++ASQG+PD +G+RS VWKLLL YL  DR+LWSSELAKKRSQ
Sbjct: 101 AQVVAELSKKVIDLKELRKIASQGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQ 160

Query: 135 YKHFKDDLLMNP 146
           YK FK++LLMNP
Sbjct: 161 YKQFKEELLMNP 172


>AT4G13730.3 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamily
           protein | chr4:7970299-7974055 FORWARD LENGTH=438
          Length = 438

 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 66/72 (91%)

Query: 75  AQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQ 134
           AQ++AELS+KVID++ELR++ASQG+PD +G+RS VWKLLL YL  DR+LWSSELAKKRSQ
Sbjct: 101 AQVVAELSKKVIDLKELRKIASQGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQ 160

Query: 135 YKHFKDDLLMNP 146
           YK FK++LLMNP
Sbjct: 161 YKQFKEELLMNP 172


>AT1G04830.2 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamily
           protein | chr1:1358782-1361844 REVERSE LENGTH=459
          Length = 459

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 2/76 (2%)

Query: 71  RQGHAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAK 130
           RQ H    AELS+KVI+M+ELR LA Q +PD+ G+RSTVWKLLLGYLP +R+LWS+EL +
Sbjct: 95  RQAHVS--AELSKKVINMKELRSLALQSLPDSPGIRSTVWKLLLGYLPPERSLWSTELKQ 152

Query: 131 KRSQYKHFKDDLLMNP 146
           KRSQYKH+KD+LL +P
Sbjct: 153 KRSQYKHYKDELLTSP 168


>AT1G04830.1 | Symbols:  | Ypt/Rab-GAP domain of gyp1p superfamily
           protein | chr1:1359087-1361844 REVERSE LENGTH=448
          Length = 448

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 2/76 (2%)

Query: 71  RQGHAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAK 130
           RQ H    AELS+KVI+M+ELR LA Q +PD+ G+RSTVWKLLLGYLP +R+LWS+EL +
Sbjct: 95  RQAHVS--AELSKKVINMKELRSLALQSLPDSPGIRSTVWKLLLGYLPPERSLWSTELKQ 152

Query: 131 KRSQYKHFKDDLLMNP 146
           KRSQYKH+KD+LL +P
Sbjct: 153 KRSQYKHYKDELLTSP 168