Miyakogusa Predicted Gene

Lj0g3v0332049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332049.1 Non Chatacterized Hit- tr|D7M4K0|D7M4K0_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,57.14,6e-19,no
description,NULL; Rhomboid,Peptidase S54, rhomboid domain;
seg,NULL,CUFF.22630.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein 11...   154   3e-38

>AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein 11 |
           chr5:8951503-8953323 REVERSE LENGTH=280
          Length = 280

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 80/93 (86%)

Query: 66  KIKNSDLVPQLELGKPENKRKPEKRASGIFWVILLNIGIFVADKFFQVNGIKAMYLYHNR 125
           +   SD+ PQ EL K ++ RKP+KRA+GIFW+IL+N+GI++AD FFQV GIK++YLYHN 
Sbjct: 56  RFSQSDITPQFELDKAKDNRKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHNF 115

Query: 126 PSWYQFVTATFCHANWKHLSSNLFFLYIFGKAV 158
           P+WYQFVTATFCHANW HLSSNLFFLYIFGK V
Sbjct: 116 PAWYQFVTATFCHANWNHLSSNLFFLYIFGKLV 148