Miyakogusa Predicted Gene

Lj0g3v0331879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0331879.1 Non Chatacterized Hit- tr|J3MX08|J3MX08_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G1,50.77,0.00000000000001,seg,NULL,CUFF.22618.1
         (426 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39840.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   337   9e-93

>AT4G39840.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 20719 Blast hits to 6096
           proteins in 607 species: Archae - 22; Bacteria - 3243;
           Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses -
           128; Other Eukaryotes - 10455 (source: NCBI BLink). |
           chr4:18485268-18486623 FORWARD LENGTH=451
          Length = 451

 Score =  337 bits (864), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 155/240 (64%), Positives = 187/240 (77%)

Query: 187 WMFEDEDSDLVSDFKDLPIRFQKSLIPDLERISTTSKSYFTRANKEFTKGFKPYVGNKYA 246
           W+ ++ED D VS+F+DLP RFQ+SLIPDLERISTTSK+Y  +ANK+ TK FKPY GNKYA
Sbjct: 212 WLDDEEDEDFVSEFRDLPTRFQRSLIPDLERISTTSKNYINKANKQITKNFKPYFGNKYA 271

Query: 247 PTIATLLSCAFVXXXXXXXXXXXNKIKAYFSLQKLLLFIQAYLSIYFSILCLSSFVTGLE 306
           PTIA+++S  F+           N+ KAYFSLQK+L+FIQ YLSIYFSILCLSS VTG+E
Sbjct: 272 PTIASVVSFVFILVPLLLVSLIFNRFKAYFSLQKILIFIQIYLSIYFSILCLSSLVTGIE 331

Query: 307 PLRFFFSTSQSSYLFLQVIQTXXXXXXXXXXXXXXXXXFSTDSGLGSKFLGLTQTFVGFA 366
           PL+F ++TS S+Y+ LQ++QT                 FSTD GLG K LGL QTFVGFA
Sbjct: 332 PLKFLYATSSSTYVCLQILQTLGYVFYLLLLLMYLVLVFSTDCGLGLKVLGLAQTFVGFA 391

Query: 367 VGLHYYMTVFHRVVLRQPPKTNWKVHGIYATCFFVICVLAGADRRKKSYLEEGGEEGKKN 426
           VGLHYY+ VFHRVVLRQPPKTNWK+HG+YATCF +IC+L+ A+RRKK YLEEGG+EGKKN
Sbjct: 392 VGLHYYVAVFHRVVLRQPPKTNWKIHGVYATCFLLICLLSNAERRKKEYLEEGGDEGKKN 451