Miyakogusa Predicted Gene

Lj0g3v0331839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0331839.1 tr|F2EAE0|F2EAE0_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,52.48,3e-19,seg,NULL; adh_short,Short-chain
dehydrogenase/reductase SDR; no description,NAD(P)-binding domain;
F,CUFF.22629.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24360.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...   108   2e-24
AT3G03980.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...    49   1e-06

>AT1G24360.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr1:8640820-8643283 FORWARD LENGTH=319
          Length = 319

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 77/127 (60%), Gaps = 2/127 (1%)

Query: 22  RKIAQIRQWSPILTHLRPLSGLRCGXXXXXXXXXXGVRAQVATLEQAGTGAPSKVDAPVV 81
           R+I+QIRQ +P+ + +     LRC            V+AQ    EQ+      KV++PVV
Sbjct: 22  REISQIRQLAPLHSAIPHFGMLRCRSRQPFSTSV--VKAQATATEQSPGEVVQKVESPVV 79

Query: 82  VVTGASRGIGRAIALSLGKAGCKVLVNYXXXXXXXXXXXXXXXXFGGQAITFKGNVSNED 141
           V+TGASRGIG+AIAL+LGKAGCKVLVNY                +GGQAITF G+VS   
Sbjct: 80  VITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGGQAITFGGDVSKAT 139

Query: 142 DVESMIK 148
           DV++M+K
Sbjct: 140 DVDAMMK 146


>AT3G03980.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr3:1031786-1033081 FORWARD LENGTH=270
          Length = 270

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 80  VVVVTGASRGIGRAIALSLGKAGCKVLVNYXXXXXXXXXXXXXXXXF---------GGQA 130
           V +VTG+SRGIGRAIA+ L + G ++++NY                F         G +A
Sbjct: 18  VAIVTGSSRGIGRAIAIHLAELGARIVINYTSKAADAERVASEINDFPVREEITGKGPRA 77

Query: 131 ITFKGNVSNEDDVESMIKAVSS 152
           I  + NVS    V+SM  A  S
Sbjct: 78  IVVQANVSEPSQVKSMFDAAES 99