Miyakogusa Predicted Gene
- Lj0g3v0331349.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0331349.1 tr|A9SZH0|A9SZH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_167287,37.11,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL; CRM,RNA-binding, CRM
do,CUFF.22573.1
(202 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 165 2e-41
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 67 6e-12
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c... 66 2e-11
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 64 6e-11
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 60 7e-10
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl... 49 2e-06
AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (C... 48 3e-06
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Query: 63 GEIFVPLPHNIPKHRVGHTLDPSWSTPENPVPLPGTGIARLSANELXXXXXXXXXXXXXX 122
GEIFVPLP +P HRVGHT+D SWSTP PVP PG+G A +EL
Sbjct: 95 GEIFVPLPKQLPIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMERKK 154
Query: 123 XXXXVPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIV 182
VP+LAEL+LP +E+ RL T+G ++ +K+K+GKAGITEGIVNGIHERWR +EVV+I
Sbjct: 155 EEK-VPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIF 213
Query: 183 CDDICRINMKRTHDLLE 199
C+DI R+NMKRTHD+LE
Sbjct: 214 CEDISRMNMKRTHDVLE 230
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 131 AELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRIN 190
AE +P E+ RL + +M +++KVG AGIT+ +V IHE+W EVV++ + +N
Sbjct: 240 AERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLN 299
Query: 191 MKRTHDLLE 199
MKRTH++LE
Sbjct: 300 MKRTHEVLE 308
>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
chr4:8337390-8341057 REVERSE LENGTH=907
Length = 907
Score = 65.9 bits (159), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 49/71 (69%)
Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
+LAE++L E+ RL + F+ K K++V AG+T+ +V+ I E+W+ SE+VR+ +
Sbjct: 216 SLAEMTLSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSA 275
Query: 189 INMKRTHDLLE 199
+NM+R H++LE
Sbjct: 276 LNMRRMHEILE 286
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 63.9 bits (154), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 48/71 (67%)
Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
+LAE++LP SE+ RL L F+ K+++ G+T+ V+ I E+W+ +E+VR+ +
Sbjct: 215 SLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASA 274
Query: 189 INMKRTHDLLE 199
+NM++ H++LE
Sbjct: 275 LNMRKMHEILE 285
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 49/73 (67%)
Query: 127 VPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDI 186
P+LAEL++ +SE+ RL G ++ +I + KAG+T+ ++ I++ WR+ E+VR+ ++
Sbjct: 235 APSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEV 294
Query: 187 CRINMKRTHDLLE 199
+MK H+++E
Sbjct: 295 LARDMKTAHEIVE 307
>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD
LENGTH=720
Length = 720
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 127 VPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCD-D 185
VPT AEL L + RL +M++ + V KAG+TE +VN I W+ +E+ + D
Sbjct: 199 VPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVP 258
Query: 186 ICRINMKRTHDLLE 199
+CR NM+R +++E
Sbjct: 259 LCR-NMERAQEIIE 271
>AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr2:8644464-8647090 FORWARD
LENGTH=701
Length = 701
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 135 LPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRINMKRT 194
L E+ L T + +++ +G+ G+T ++N IH+ W+R V +I C +C ++M
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 195 HDLLE 199
+ LE
Sbjct: 303 CEQLE 307